Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N04
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.034
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.42 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   1.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   9.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 839  PPPPXXLXPXXXPPPQXGXPPXPPPP 916
            PPPP  + P    PP    PP  PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 845  PPXXLXPXXXPPPQXGXPPXPPPPTXGXXPXTXXXP 952
            PP    P   PPP    PP   PP     P     P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 845  PPXXLXPXXXPPPQXGXPPXPPPP 916
            PP  + P    PPQ   P  PPPP
Sbjct: 1690 PP--VRPQSAAPPQMSAPTPPPPP 1711


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 842  PPPXXLXPXXXPPPQXGXPPXPPPPTXGXXP 934
            PPP    P   P P  G PP PPP T    P
Sbjct: 1192 PPPSEAPPV--PKPSVGVPPVPPPSTAPPVP 1220



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 839  PPPPXXLXPXXXPPPQXGXPPXPPP 913
            P P   + P   P P  G PP PPP
Sbjct: 1172 PAPSSGIPPV--PKPAAGVPPVPPP 1194


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQXGXPPXPPPP 916
           P P     P   P P  G PP PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQ----XGXPPXPPPP 916
           PP P    P   PPP      G PP PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQXGXPPXPPPPTXGXXPXTXXXP 952
           PPPP  + P   P P    P  PP P  G  P     P
Sbjct: 734 PPPPAVIVPTPAPAP---IPVPPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQXG----XPPXPPPP 916
           PPP   +     PPP  G     PP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 146  LVGDISSSLXTSQAGPIQRDTFHEACEE 229
            LV  +S  +  SQAGP  RDT H   +E
Sbjct: 1332 LVLQLSQLISGSQAGPFARDTIHALMDE 1359


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 924 PXVGGGGXGGXPXXGGGXXXGXRXXGGGG 838
           P  GGG  GG    GG    G R   GGG
Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGGFGGG 471


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQXGXPPXPPPPTXGXXPXTXXXP 952
           PPPP        P P  G    PPPP     P T   P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRS-APSTGRQP 376


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 845 PPXXLXPXXXPPPQXGXPPXPPPP 916
           PP    P    P     PP PPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 839 PPPPXXLXPXXXPPPQXGXPPXPPPP 916
           PPPP    P   PPP       PPPP
Sbjct: 12  PPPPPGFEPPSQPPP-------PPPP 30



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 842 PPPXXLXPXXXPPPQXGXPPXPPPP 916
           PPP    P   PP Q    P PPPP
Sbjct: 9   PPPPPPPPGFEPPSQ----PPPPPP 29


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 863 PXXXPPPQXGXPPXPPPPT 919
           P   PPP    PP PP PT
Sbjct: 802 PFKAPPPAPLPPPAPPLPT 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,334
Number of Sequences: 5004
Number of extensions: 44786
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)