Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N04
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 323 ARSNVHG-RLTVERVQRLDTCNNFII 249
           ARS + G R+T E+++R D  +N+I+
Sbjct: 707 ARSLMEGPRMTAEQLKRTDIIHNYIM 732


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 884  QXGXPPXPPPPTXG 925
            Q   PP PPPP+ G
Sbjct: 1352 QQQPPPPPPPPSSG 1365


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +3

Query: 156 IYPVPXVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGY 335
           +Y  P   H L   N  PFMK    Y     +N    GIQ + +  S A V    G + +
Sbjct: 266 LYYSPLTSHSLYYVNMEPFMK--SQY---EENNIEYEGIQDIFNTQSSAKVMSKNGVLFF 320

Query: 336 PYVN 347
             VN
Sbjct: 321 GLVN 324


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 935 GGXXRGLXGGEXVVXRXXGGG 873
           GG   G  GG  VV    GGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGG 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,839
Number of Sequences: 438
Number of extensions: 5563
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)