Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N03
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 327 IRPKWASSRSGQVXIEINLFIRLSRSKTKCCSRVYCPIELKFAE 196
           IRP   ++  G   + +N+F+R S SK    +  Y  ++L F E
Sbjct: 47  IRPSGENATDGPAVVRVNIFVR-SISKIDDVTMEY-SVQLTFRE 88


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 78  YNNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 188
           YNNY      ++  Y        YI ++ +IP+ +P+
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPI 363


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 327 IRPKWASSRSGQVXIEINLFIR 262
           IRP   ++  G   + +NLF+R
Sbjct: 47  IRPSGENATDGPAIVRVNLFVR 68


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 72  WEYNNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 188
           + YNN    +K ++  Y        YI ++ +IP+ +PV
Sbjct: 322 YNYNNNN--YKYNYNNYNKKLYYKNYIINIEQIPVPVPV 358


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 81  NNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 188
           NNYK     ++  Y        YI ++ +IP+ +P+
Sbjct: 87  NNYKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPI 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,619
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)