Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N01
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   8.4  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 582 PPPXLXXXXPXPXPXPPXPXXPXPXPPXPPXP 677
           PPP      P P P PP      P PP PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 582 PPPXLXXXXPXPXPXPPXPXXPXPXPPXPPXP 677
           PPP +    P P P P  P  P    P PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = +2

Query: 464 PPPXXPPX---PXPPPXPXPPP 520
           PPP  PP      PPP P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXPXPPP 520
           PP    P P P P P PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPP 754



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXP---XPPP 520
           P P   P P PPP P    PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPP 763


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 464  PPPXXPPXPXPPPXPXPPP 520
            PPP  PP P  PP   PPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 582  PPPXLXXXXPXPXPXPPXPXXPXPXPPXPPXP 677
            PPP +    P P   PP P  P P  P PP P
Sbjct: 1708 PPPPMSV--PPPPSAPPMPAGP-PSAPPPPLP 1736



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 464  PPPXXPPXPXPPPXPXPPP 520
            PP    P P PPP   PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 464  PPPXXPPXPXPPPXPXPPP 520
            PP   PP P  PP P  PP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPP 1728



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 464  PPPXXPPXPXPPPXPXPP 517
            P P  PP   PPP   PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXPXPPP 520
           PPP  PP   PP  P PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 467 PPXXPPXPXPPPXPXPP 517
           PP  PP P PPP   PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXPXPPP 520
           PPP  PP    PP   PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 615 PXPXPPXPXXPXPXPPXPPXP 677
           P P PP P    P  P PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 615 PXPXPPXPXXPXPXPPXPPXP 677
           P P PP    P   PP PP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 609 PXPXPXPPXPXXPXPXPPXPP 671
           P P P PP    P   PP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXPXP 514
           PPP   P   PPP P P
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 467 PPXXPPXPXPPPXPXPPP 520
           PP  P  P PPP P P P
Sbjct: 467 PPLPPAAPAPPPAPAPAP 484



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 585 PPXLXXXXPXPXPXPPXPXXPXPXPPXPPXP 677
           PP      P P   P  P  P   P  PP P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 136 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 282
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 254 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 84
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 3.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 494 PPPXPXPPP 520
           PPP P PPP
Sbjct: 945 PPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 470 PXXPPXPXPPP 502
           P  PP P PPP
Sbjct: 942 PAFPPPPPPPP 952


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/68 (25%), Positives = 17/68 (25%)
 Frame = +2

Query: 464 PPPXXPPXPXPPPXPXPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXPPXXXXXXXPX 643
           PP   PP P  PP P P                              P  P       P 
Sbjct: 139 PPTSAPPRPSIPP-PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197

Query: 644 PXPXPPPP 667
           P   PPPP
Sbjct: 198 PPKVPPPP 205


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 324 RGSTESLRSNFLVSKYITPNNIRNVINVSPN 416
           + +T +  S+F  S+Y T NN +N  N SPN
Sbjct: 229 QNTTNNRVSSFQNSQYSTLNNFQNNSNQSPN 259


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/76 (23%), Positives = 18/76 (23%)
 Frame = +2

Query: 440 FSXXEXXXPPPXXPPXPXPPPXPXPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXPPX 619
           F       P    P    PPP P PPP                              P  
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEI---PPTY 227

Query: 620 XXXXXXPXPXPXPPPP 667
                 P P P PPPP
Sbjct: 228 TPKQADPLPAPPPPPP 243


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 224 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 96
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 270 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 383
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,321
Number of Sequences: 5004
Number of extensions: 43473
Number of successful extensions: 377
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)