Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M23
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    52   1e-07
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    52   1e-07
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   4.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +1

Query: 217 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREXGLIXXVVXH 381
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E G+I  V  H
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQH 75


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +1

Query: 217 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREXGLIXXVVXH 381
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E G+I  V  H
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQH 75


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 305 FNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL-ALP 153
           FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL ALP
Sbjct: 151 FNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFLEALP 201


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 245  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 147
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 119 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 217
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 226 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 125
           YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/56 (26%), Positives = 18/56 (32%)
 Frame = +1

Query: 832 PPPXXXXLXPXPXPSXXXXXPXXPXXXXXXAXXXXLXXPXXXSPXXXXSXPPPXPP 999
           PPP    + P P P+     P  P              P    P    + PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGG--------PPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,903
Number of Sequences: 5004
Number of extensions: 46843
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)