Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M23
         (1001 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    87   2e-17
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.32 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.32 
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   3.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   9.1  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 50/104 (48%), Positives = 56/104 (53%)
 Frame = +1

Query: 76  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 255
           MPPKKD K     P                            LNN VLFD+ TY+KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 256 VPQYKLITPAVVSERLKVRGSLARRALIELREXGLIXXVVXHXG 387
           V  YKLITP+VVSERLKVR SLA+  L EL+  GL+  VV H G
Sbjct: 58  VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHG 101


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 26/111 (23%), Positives = 30/111 (27%)
 Frame = +2

Query: 548 PPLXTXXXXXXXPPPPPXTAXXXPCXPWSHS*LPLXXXRXPLIXPPXPXXTPXXXXSXFI 727
           PP+         PPPPP +    P  P      P       +  PP P            
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 334

Query: 728 LXXVPAXRWXPGXXXAXTXSXXPPGGPXXXXXFXPPXPXXXXSXXXXXPPP 880
               P  R+ PG          P  GP       P  P    S     PPP
Sbjct: 335 PPPPPGMRY-PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 26/104 (25%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
 Frame = +2

Query: 584 PPPPPXTAXXXPCXPWSHS*LPL-----XXXRXPLIXPPXPXXTPXXXXSXFILXXVPAX 748
           PPPPP      P  P +    P           P   PP P  TP       +    P  
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323

Query: 749 RWXPGXXXAXTXSXXPPGGPXXXXXFXPPXPXXXXSXXXXXPPP 880
           R+ P           PPG         PP P    +     PPP
Sbjct: 324 RFGP-PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 26/111 (23%), Positives = 30/111 (27%)
 Frame = +2

Query: 548 PPLXTXXXXXXXPPPPPXTAXXXPCXPWSHS*LPLXXXRXPLIXPPXPXXTPXXXXSXFI 727
           PP+         PPPPP +    P  P      P       +  PP P            
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 344

Query: 728 LXXVPAXRWXPGXXXAXTXSXXPPGGPXXXXXFXPPXPXXXXSXXXXXPPP 880
               P  R+ PG          P  GP       P  P    S     PPP
Sbjct: 345 PPPPPGMRY-PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 26/104 (25%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
 Frame = +2

Query: 584 PPPPPXTAXXXPCXPWSHS*LPL-----XXXRXPLIXPPXPXXTPXXXXSXFILXXVPAX 748
           PPPPP      P  P +    P           P   PP P  TP       +    P  
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333

Query: 749 RWXPGXXXAXTXSXXPPGGPXXXXXFXPPXPXXXXSXXXXXPPP 880
           R+ P           PPG         PP P    +     PPP
Sbjct: 334 RFGP-PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 27/98 (27%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
 Frame = -2

Query: 874 RGXGXGGXGXG-GXGGXKXXXXGXAPGXXXRXXXXXXXPGGPXXGGNXXEDEX*XXVGWG 698
           RG G GG G   G GG      G   G            GG   G    + E      W 
Sbjct: 87  RGGGRGGFGGSRGGGGYDGGRGGSRGGYDGGRGGYGGDRGGRGGGRGGYDGERRGGSRWD 146

Query: 697 XXXXXRXYXWXPXXXKXXSRMGPRXAGXXXGSXGGGGG 584
                R     P         GPR  G   G   GGGG
Sbjct: 147 DGNSDRQ-GGPPGGRGGYQDRGPRRDGPPSGGGYGGGG 183


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 87  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 188
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 831 PPXPPXPXPPXPXPL 875
           PP PP P PP P P+
Sbjct: 74  PPPPPMPCPPPPPPM 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,270
Number of Sequences: 27780
Number of extensions: 367077
Number of successful extensions: 1724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)