Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M21
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.6  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   2.1  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    28   2.1  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   3.6  

>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 258  GDMPLEEINPDLAEAFNALP-AGRSAGKDVEAAPEIPEHYSSKLNVPEN 401
            G   + E+   +   F  L  AG  AG  +E  PEIP+H     N   N
Sbjct: 1379 GSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWNTTWN 1427


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 432 IFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQR 328
           + +SG+ Q LG       M S REF  + +HLY +
Sbjct: 117 LLESGFSQPLGLNNR--FMPSTREFAAIFKHLYNK 149


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 358 KFPNTTHQNLMCPKTQKLVIAALKNRNFSKRAQLRYILNVN 480
           + P T    L   +TQ L     KN +F K ++L Y LN++
Sbjct: 70  ELPKTEQAILKSERTQYLEYFRKKNPSFEKVSELLYFLNIS 110


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
 Frame = +3

Query: 126 RYSILKCTNHSSXXXXXXXXXXEARPKWQFLPQAPGYVPVYIRSGDMPLEEINP----DL 293
           RY+I    +  S          +    +   PQ    +  Y+ +GD+PL++       D+
Sbjct: 125 RYTIQNLPSTQSNRVFDAIRVEQGHTTYHPHPQLDSMIQEYLSNGDLPLQQSTEDYVYDI 184

Query: 294 AEAFNALPAGRSAGKDVEAAPEIPEHYSSKLNVPENPEIGDS 419
            EA +  P   +    V  A  IP+ + S L      E  DS
Sbjct: 185 YEASSKEPNKPTFAYGVIDALSIPDAFRSSLEQELVSETVDS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,343
Number of Sequences: 5004
Number of extensions: 52966
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)