Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_M20
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.053
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.22
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.28
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.38
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = +1
Query: 709 PPPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPPPXXXXXXPPP 870
PPP P + PPP PPPPPP PPPP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +1
Query: 667 KTXLXPPXXXXXXXPPPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPPP 843
K+ PP P P PP + PP PPPPPP P PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--------PPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 736 PPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPPPXXXXXXPPP 870
PP + P P + PPP P P PPPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGP-PPPPPPPGVAGAGPPP 777
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 708 PPPPXQXXXPPPFFSXXXPPXXFFXXXPPPPPP 806
PPP P P PP PPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Frame = +1
Query: 790 PPPPPPXXXXFXPSP-----PPPXXXXXXPPP 870
PPPPPP P+P PPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 708 PPPPXQXXXPPPFFSXXXPPXXFFXXXPPPPPP 806
PPPP P PP PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.053
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 709 PPPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPPPXXXXXXP 864
PP PP PPP PP PP +PPPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 715 PXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPP-PXXXXXXPPP 870
P + PP+ PP S PPPPP PS PP P PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSA--PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = +1
Query: 682 PPXXXXXXXPPPXNXXXXPPLFFLXXPPPXXSXXXXPP---PPPPXXXXFXPSPPPP 843
PP PP + PP PPP P PPPP PS P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 675 SXXXPXXXXXXPPPPXQXXXPPPFFSXXXPPXXFFXXXPPPPP 803
S P PPPP PPP PP PPPP
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPP----SAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/40 (30%), Positives = 13/40 (32%)
Frame = +3
Query: 687 PXXXXXXPPPPXQXXXPPPFFSXXXPPXXFFXXXPPPPPP 806
P PP Q PP + PP PP PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = +1
Query: 664 KKTXLXPPXXXXXXXPP-PXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPP 840
K + PP PP P PP+ PP PP P P P P
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Query: 841 PXXXXXXPPP 870
PPP
Sbjct: 1185 AAGVPPVPPP 1194
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +1
Query: 664 KKTXLXPPXXXXXXXPP-PXNXXXXPPLFF--LXXPPPXXSXXXXPPPPPPXXXXFXPSP 834
K + PP PP P PP+ PP PP PPP P P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP--PVP 1201
Query: 835 PPPXXXXXXPPP 870
P PPP
Sbjct: 1202 KPSVGVPPVPPP 1213
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 682 PPXXXXXXXPPPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPPPXXXXXX 861
PP PP PP+ P S PPP P PS P P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPV------PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Query: 862 PPP 870
P P
Sbjct: 1086 PAP 1088
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 790 PPPPPPXXXXFXPSPPPPXXXXXXPPP 870
PPPPPP PS PPP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPP-----PPPP 30
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 760 PPPXXSXXXXPPPPPP 807
PPP PPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 712 PPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPP 807
PP N PP PP PPPPPP
Sbjct: 5 PPGNPPPPPP------PPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 790 PPPPPPXXXXFXPSPPPPXXXXXXPPP 870
PPPPPP P PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 790 PPPPPPXXXXFXPSPPPPXXXXXXPPP 870
PPPPPP S P P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +1
Query: 682 PPXXXXXXXPPPXNXXXXPPLFFLXXPPPXXSXXXXPPPPPPXXXXFXPSPPP--PXXXX 855
PP PP N L PPP S P PP P PPP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSL--PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 856 XXPPP 870
PPP
Sbjct: 374 RQPPP 378
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -3
Query: 869 GGGXXXXXXGGGGEGKKXXXXGGGGGGXXXKEXXGGGXXRKKRGGXXXLXXGGG 708
G G G GGEG GG GGG E GG G L GG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 836 GGEGKKXXXXGGGGGGXXXKEXXGGGXXRKKRGGXXXLXXGGG 708
GG G GG GGG G G R RGG G G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = -3
Query: 866 GGXXXXXXGGGGEGKKXXXXGGGGGGXXXKEXXGGGXXRKKRGGXXXLXXGGGXXXXXXX 687
GG G GG GGG GG G R RGG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Query: 686 GGXRXV 669
GG + +
Sbjct: 69 GGAKVI 74
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 790 PPPPPPXXXXFXPSPPPP 843
PPPPPP +P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,045
Number of Sequences: 5004
Number of extensions: 29714
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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