Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M19
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.33 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.66 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 0.33
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 739 PXPPPXPPPXXP 774
           P PPP PPP  P
Sbjct: 236 PAPPPPPPPTLP 247



 Score = 23.8 bits (49), Expect(2) = 0.33
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 724 PPXXPPXPPPXPPP 765
           P    P PPP PPP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/48 (41%), Positives = 20/48 (41%)
 Frame = -1

Query: 799 RGGNAXXXXGXXGGGXGGXXGGXREGXGXGWESSXWTVRGXGXGGXGG 656
           RGG      G  GGG GG  GG R G G          RG   GG GG
Sbjct: 25  RGGFGGGRGGARGGGRGGARGG-RGGRGGARGG-----RGGSSGGRGG 66



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 821 GGXGTPX*RGECXXXXGXXGGGXGGGXGGX*GG 723
           G  G+   RG      G  GGG GG  GG  GG
Sbjct: 10  GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = +1

Query: 709 THXXFPPXXPPXPPPXPPPXXPXXXXHS-PLXXGVPXPPHXP 831
           T    PP  PP  PP  PP  P     + PL    P  P  P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +1

Query: 724 PPXXPPXPP---PXPPPXXPXXXXHSPLXXGVPXPPHXP 831
           PP  PP  P   P  PP  P      PL  G+P  P  P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +1

Query: 727 PXXPPXPPPXP--PPXXPXXXXHSPLXXGVPXPPHXP 831
           P  PP PP  P  PP         PL    P PP  P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 724 PPXXPPXPPPXPPPXXPXXXXHSPLXXGVPXPPHXP 831
           P   PP  PP  PP  P     S L  G P  P  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPS-LPMGAPAAPPLP 450


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 724  PPXXPPXPPPXPPPXXPXXXXHSPLXXGVPXPPHXP 831
            PP      PP PP   P      P+  G P  P  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 772 GXXGGGXGGXXGGXREGXGXGW 707
           G  GGG GG  GG     G GW
Sbjct: 252 GGFGGGPGGFGGGPGGHGGPGW 273


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 45  STHSLCVAVRFASPPHSVSRQYIMAAKFVVLFACI 149
           + +++C   RF    H++SR+++++ +F+   A I
Sbjct: 513 AAYAICHYYRFFRTSHTISRKFMLSIEFIYQLATI 547


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = +1

Query: 724 PPXXPPXPPPXP---PPXXP 774
           PP  PP PPP P   PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP 24


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 724 PPXXPPXPPPXPPPXXPXXXXHSPLXXGVPXPPHXP 831
           PP  P    P P P        +P+  G P PP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 727 PXXPPXPPPXPPPXXPXXXXHSPLXXGVPXPPHXP 831
           P  P  PPP P    P      P+   +P PP  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLP-PPAQP 177



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
 Frame = +1

Query: 724 PPXXPPXPPPXPPPXXPXXXXHSP-----LXXGV-PXPPHXP 831
           P   PP P   PPP  P     SP     L   V P PP  P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,937
Number of Sequences: 5004
Number of extensions: 32897
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)