Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M06
         (987 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850...    52   7e-07
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    51   1e-06
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...    42   0.001
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    31   1.1  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    29   5.7  

>08_01_0871 +
           8502396-8502417,8503606-8503732,8503891-8503990,
           8504725-8504793,8504870-8505043,8505196-8505373,
           8505462-8505594,8505702-8505864,8507031-8507181,
           8507266-8507366,8507633-8507788,8508105-8508173,
           8508256-8508324,8508403-8508540,8508639-8508767,
           8509013-8509053,8510019-8510106,8510199-8510339,
           8510428-8510553,8510671-8510736,8510994-8511291,
           8511387-8511595,8511689-8511802
          Length = 953

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +2

Query: 245 TAGVQIWRIQNFEPIPVAXKDIGKFYKGDSXXXLRTTS 358
           T G++IWRI+NF+P+P+     GKF+ GDS   L+TT+
Sbjct: 49  TGGLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTA 86



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 AKVHPAFANVGRTAGVQIWRIQNFEPIPVAXKDIGKFYKGD 331
           AK  P  A +  T  +Q+WRI + + I +   D  KFY GD
Sbjct: 391 AKEEPQ-AYIDCTGSLQVWRINDKDKILLPSADQSKFYTGD 430


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 248 AGVQIWRIQNFEPIPVAXKDIGKFYKGDSXXXLRTTS 358
           +G+++WRI+NF+P+PV     GKFY GDS   L+TT+
Sbjct: 37  SGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTA 73


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 248 AGVQIWRIQNFEPIPVAXKDIGKFYKGDSXXXLRTTS 358
           +G++IWRI+  + +PV  +  G+F+ GDS   L+TT+
Sbjct: 76  SGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTA 112


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 215 VHPAFANVGRTAGVQIWRIQNFEPIPVAXKDIGKFYKGDSXXXLRT 352
           V  AF  VG   G+ IW I     I +     GKFY G++   L T
Sbjct: 4   VDDAFLGVGDKPGLDIWCIMGSNLIAIEKSLHGKFYTGNTYIILST 49


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = +2

Query: 77  MDEDHFFXVSFLFSWDPSGHGRRPS-----LRR*AGPITSLSDKNARDK----AKVHPAF 229
           +D+DH   ++ L SW     G+RP       +R   P  S  D + RDK     + HPAF
Sbjct: 375 IDQDHISLMNCLLSWFERMDGQRPPFFDELFQRIRFP-ASAEDPDGRDKYLFVLRNHPAF 433

Query: 230 ANVGRTAG 253
           A   +  G
Sbjct: 434 ARPAKRRG 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,305
Number of Sequences: 37544
Number of extensions: 353388
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)