Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M04
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    33   0.078
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    31   0.18 
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   0.62 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   5.1  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    27   5.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   5.1  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.7 bits (71), Expect = 0.078
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = -1

Query: 944 GGRXRXCGGXXEFEGMXXGARGXXXGXSXEGGGGXXGXGGXR 819
           GGR    GG   F G   GARG   G +  G GG  G  G R
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR 57



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -1

Query: 944 GGRXRXCGGXXEFEGMXXGARGXXXGXSXEGGGGXXGXGGXR 819
           GGR    GG   F G   G  G   G    G GG  G  G R
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR 50


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -1

Query: 320 IPIAVXD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 150
           IP+A+ D  E+V+   DD + ++ +      N R+    G+S +EPR R   SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect(2) = 0.62
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 401 CXN*SREVVFDDFLTLPDPQFVGELXNIPIAVXDEIVDGILDDA 270
           C N S  +     L+  +PQ+V      P++V  E  D  L DA
Sbjct: 57  CGNQSTPIATKSHLSCINPQYVNPFDTSPVSVDTEFQDTYLLDA 100



 Score = 21.0 bits (42), Expect(2) = 0.62
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 200 IDEPRFRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLHR*FPRQL 66
           +D P F      +  +V   ++    ++  R++H  LH+   R L
Sbjct: 98  LDAPSFAQPHFSERQSVDKTRSRCLSRNRRRKRHPNLHKNHQRLL 142


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 166 PLRPERKRGSSMLSPLPI 219
           PL+P+R RG   L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 237 LILLLEKQSSGSIIEDTVNNLIXDGNRNVXXFAYKLWIGEGKEIVK 374
           +IL LEK  +  +++  VNN I   +R++   A   +I +G+ IVK
Sbjct: 45  VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = -2

Query: 268 PLDCFSSSRIR-ETAVL*SAVVIASTSLVSA-LVGADRMLMSKSIRPALAASTQVEKNTK 95
           P+D F S     +T+V  S+ V+ S +L    LV  + ++   +  P+   S+++ +NTK
Sbjct: 287 PIDPFLSLESNVQTSVSQSSAVLKSINLAKQELVSVNHLVADDTKTPSPNLSSEIIENTK 346

Query: 94  NFIVDSLGS*HREV 53
             I  S+ S ++ V
Sbjct: 347 ADIKKSIRSLNKAV 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,776
Number of Sequences: 5004
Number of extensions: 44729
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)