Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_M03
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   4.7  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   4.7  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 211 VKRIIHAVRTI----IMSRLCFLRCLLDTHAPIKLPHNVQIIVG 330
           VK  +H   T+    I S L  + CLL + A ++L H VQ +VG
Sbjct: 250 VKHYVHEYPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVG 293


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 451 DGFALKKDEVYEIGHGSTIEILLN-NHVHILEFDPPPESLTTSQN 582
           D + ++++      H S   I L  + +  L FDPPP ++ TS N
Sbjct: 435 DSYFIQRENT-PTNHNSIPTIQLEKSSMDFLRFDPPPSAVKTSHN 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,302
Number of Sequences: 5004
Number of extensions: 53690
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)