Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L24
         (1066 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
 Frame = +3

Query: 606 PXXXXRLXPXLXPX-SSXXPXXPPXPXSPXLXRXPRXXXXXXXXAXPTX-LAXPLXXXSY 779
           P    R  P L P  ++     PP P  P L   P         A P+  +  P      
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLP--PSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 780 XXXPXXPPRASXXPXXPXXPXPXPXPXP 863
              P  PP  +  P  P  P   P P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 20/87 (22%), Positives = 23/87 (26%)
 Frame = +3

Query: 426 PXXPPAPTPXKXHXFQPCXXPXXXPXXPPXPTXXXXXXXXSPXXXXXLXXPXXXXXXXXX 605
           P   PAP   +     P   P      PP P         +P     L  P         
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 606 PXXXXRLXPXLXPXSSXXPXXPPXPXS 686
           P     L   + P     P  PP P S
Sbjct: 184 PPSAPSLPSAVPP---MPPKVPPPPLS 207


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 799 PPXPAXXPXXXXLXXPXPXPSPXPXXXXXMXXTPPP 906
           PP P   P    +  P P P P P     M   PPP
Sbjct: 732 PPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/71 (23%), Positives = 19/71 (26%)
 Frame = +1

Query: 799  PPXPAXXPXXXXLXXPXPXPSPXPXXXXXMXXTPPPXVSXXXXHXXESXPXXYALXXXR* 978
            PP P           P P P P P         PPP V+          P   +    R 
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792

Query: 979  PXPPPXXXSPP 1011
              P P     P
Sbjct: 793  YAPAPQAEPEP 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,436
Number of Sequences: 5004
Number of extensions: 13853
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)