Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L24
         (1066 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   7.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   7.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   7.4  

>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 789 PXXPPRASXXPXXPXXPXPXPXPXP 863
           P  PPR    P  P  P P P P P
Sbjct: 125 PPNPPRTCCPPPTPAAPPPPPPPPP 149


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = +1

Query: 799  PPXPAXXPXXXXLXXPXPXPSP-XPXXXXXMXXTPPPXVSXXXXHXXESXPXXYALXXXR 975
            PP P   P       P P P+   P         PPP  S        S P   A     
Sbjct: 240  PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA---GS 296

Query: 976  *PXPPPXXXSPP 1011
             P PPP   SPP
Sbjct: 297  PPPPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = +1

Query: 799  PPXPAXXPXXXXLXXPXPXPSP-XPXXXXXMXXTPPPXVSXXXXHXXESXPXXYALXXXR 975
            PP P   P       P P P+   P         PPP  S        S P   A     
Sbjct: 261  PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA---GS 317

Query: 976  *PXPPPXXXSPP 1011
             P PPP   SPP
Sbjct: 318  PPPPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = +1

Query: 799  PPXPAXXPXXXXLXXPXPXPSP-XPXXXXXMXXTPPPXVSXXXXHXXESXPXXYALXXXR 975
            PP P   P       P P P+   P         PPP  S        S P   A     
Sbjct: 246  PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA---GS 302

Query: 976  *PXPPPXXXSPP 1011
             P PPP   SPP
Sbjct: 303  PPPPPPPRGSPP 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,339
Number of Sequences: 27780
Number of extensions: 131738
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2845728736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)