Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L18
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   4.0  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   5.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   7.0  

>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 120 HGNQEVEVLKDNVHNASQLVVDYQTNT-LFFSHSSLFEGKTVLKSAYLNLNTKEFGEISG 296
           H    ++V++  V + ++ V  Y  N  L F   S   GKT L S+++N NT      + 
Sbjct: 396 HNTDALKVMRKRV-SQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454

Query: 297 INS 305
           +NS
Sbjct: 455 VNS 457


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 81  MKLIILITIIAFVHGNQEVEVLKDNVHNASQLVVDYQTNTLFFSHSSLF 227
           ++L+  ++IIA +HGN+E+ V   ++   + L +D + +      SS F
Sbjct: 408 IQLLTPVSIIASLHGNKEIGV--QDIEECNDLFLDARRSAQVVKSSSGF 454


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 177 VVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINSGVXTAYDRSXNVVYLGG 356
           VV   T+  FF    L +GK+V K   L     E  +   + SG+  A     N+V+LG 
Sbjct: 369 VVLVHTSGQFFYLDFLLDGKSV-KGLSLQALDLEIND-DFLKSGITCAVPAGENLVFLGS 426

Query: 357 Q 359
           Q
Sbjct: 427 Q 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,331
Number of Sequences: 5004
Number of extensions: 38674
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)