Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L18
         (979 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    31   1.2  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   6.7  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +1

Query: 616 PPGPLXXRXXSPXAPXSPXTLYPXPXPXPCAPXXHSPPXXXXSXXLP 756
           PPGP       P  P  P   YP P P P AP    P     S   P
Sbjct: 137 PPGPPRPHFPGPPGPHRPPEHYPGP-PRPQAPAAPPPKSLFPSAQKP 182


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/59 (32%), Positives = 20/59 (33%)
 Frame = -3

Query: 791 AGXXGXXGGXRWGRXXEXXXXGGECXWGAXGXGXGXGXRVXGEXGAXGXXXRXXXGPGG 615
           +G  G  GG  WG        GG    G  G G G G    G  G  G       G GG
Sbjct: 62  SGWGGGRGGG-WGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGG 119


>Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical
           protein F55C5.9 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 437 HLPYXVIXDTQXLCRFRCXIKFIYPILSTKVHNVXASIICSXYARIDAGYF 285
           HLPY ++  T  L  F     F++ +LS  +     SII   Y R  A  F
Sbjct: 74  HLPYPLLRATGILAEFGFSGLFLFYVLSAFIIQTSFSIIEMFYFRYKASVF 124


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = +1

Query: 616 PPGPLXXRXXSPXAPXSPXTLYPXPXPXPCAPXXHSPPXXXXSXXLPXRXPP 771
           PP PL      P  P SP    P P P PC P    PP    +   P   PP
Sbjct: 85  PPAPLPP----PPPPASPCC-GPSPVPAPCCP----PPPAPAAPCCPPPPPP 127


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
 Frame = +1

Query: 619 PGPLXX-RXXSPXAPXSPXTLYPXPXPXPCAPXXHSPPXXXXSXXLPXRXPPXXPXLPAX 795
           PGP+       P  P SP  + P   P P  P    PP        P R PP  P  P  
Sbjct: 212 PGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPP--GPPGPPGP---PTRRPPGPPGPPTR 266

Query: 796 XEP 804
             P
Sbjct: 267 RPP 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,162
Number of Sequences: 27780
Number of extensions: 237218
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)