Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L15
         (984 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 213 GXPPPHPXXXEKNXXXKRGXPXKPPXFPXXPXGG 314
           G P P P   +     +RG P  P   P  P GG
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGP--PPGG 50



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = +2

Query: 794 PPPXXXPXPPXXXPLPPTXXPPXLPXSGXXPGXXXLPPLLHP 919
           PP    P PP       +  PP     G  P    +P +  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 796 PPXXXPPPPPXXPPXP 843
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 793 PPPXXXPPPPP 825
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 842 GXGGXXGGGGGXWXGGGXGRXXF 774
           G G   G GG    GG  GR  F
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTGF 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,611
Number of Sequences: 438
Number of extensions: 9256
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)