Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_L12
(1076 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.64
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.0
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.64
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -2
Query: 994 GGEGRXXGGXXXXGXGGXXEGGGRSGXXXAGXEG-XGGREG 875
GG G GG G GGGR G G G GGR G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 992 RGGX*XGRGGEXXXXXXXRGGGEEWXXXG-GXGGXXREGRXXX*RNXGGGGG 840
RGG GRGG RGGG G G G R GR GG G
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 994 GGEGRXXGGXXXXGXGGXXEGGGRSGXXXAGXEGXGGREG 875
GG G GG G G GG R G G GGR G
Sbjct: 16 GGRGGFNGGRGGFGGG---RGGARGGGRGGARGGRGGRGG 52
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -1
Query: 992 RGGX*XGRGGEXXXXXXXRGGGEEWXXXGGXGGXXREGRXXX*RNXGGGG 843
RGG GRGG GG GG GG R G R GG
Sbjct: 140 RGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.5
Identities = 21/86 (24%), Positives = 24/86 (27%)
Frame = +2
Query: 503 PPXSXXPPPXXPXXXXXXXXXXSLPXXPXPRPTPPPPXXPXPSQXXTPLXXXXXXXXXXX 682
P S PP P S+ P P P+ PP P PS P+
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP-VPKPSVAAPPVPVPSGAPPVPK 1144
Query: 683 XXXXXPXXXXPXXPXLXXXPSXXPPP 760
P P PS PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPP 1170
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +1
Query: 886 RXXPPIPPXXXHSSPPPLXNXXXXXSPPLPXYXPPRXTXXRHPSPHSG 1029
R PP PP + PP+ N S P P P P P G
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Frame = +2
Query: 488 PFRXSPPXSXXPPPXXPXXXXXXXXXXSLPXXPXPRPTPPPP---XXPXPSQXXTPLXXX 658
P S PPP P S+P P R PPPP P + PL
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAG---SIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSS 382
Query: 659 XXXXXXXXXXXXXPXXXXPXXPXLXXXPSXXPPP 760
P P P L PP
Sbjct: 383 RAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/42 (28%), Positives = 15/42 (35%)
Frame = +2
Query: 506 PXSXXPPPXXPXXXXXXXXXXSLPXXPXPRPTPPPPXXPXPS 631
P + PP P + P P P PPP P P+
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +2
Query: 488 PFRXSPPXSXXP-PPXXPXXXXXXXXXXSLPXXPXPRPTPPPPXXPXPS 631
P +PP P PP P +P P P PP P PS
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +2
Query: 485 VPFRXSPPXSXXPPPXXPXXXXXXXXXX-SLPXX--PXPRPTPPPPXXPXP 628
+P + P S PPP P SLP P P PPPP P
Sbjct: 160 IPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 927 PPPSXXPPXPXLXXPPXLRPSPPHXXXXSLSTLWXALXHPPPSSXFPXXS 1076
P PS PP P PP +P+ P S +L A+ PP P S
Sbjct: 159 PIPSKAPPIPS-SLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 877 LPSRXXPPIPPXXXHSSPPPLXNXXXXXSPPLPXYXPP 990
+PS PP P SPP + PP+P PP
Sbjct: 167 IPSSLPPPAQPAAPVKSPPSAPSLPSAV-PPMPPKVPP 203
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 918 PLLPPPSXXPPXPXLXXPPXLRPSPP 995
P LPP P P L P + P PP
Sbjct: 372 PQLPPSPSSPSSPALSVKPNIDPQPP 397
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 500 SPPXSXXPPPXXPXXXXXXXXXXSLPXXPXPRPTPPPP 613
S P S PP SLP P P PPPP
Sbjct: 159 SAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 569 SLPXXPXPRPTPPPPXXPXPSQXXTP 646
SLP P P PPPP PSQ P
Sbjct: 3 SLPPGNPP-PPPPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,094
Number of Sequences: 5004
Number of extensions: 31111
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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