Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L10
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   4.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.3  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPPP       PP          PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPPP        P        P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 805 PPPPXPPPXXRXXXPXXXXXXXXXXPPPPP 894
           PPPP P    R   P          PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 796 PPXPPPPXPPPXXRXXXPXXXXXXXXXXPPPPP 894
           PP PPP   P   R   P          P PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 27.5 bits (58), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 811 PPXPPPXXRXXXPXXXXXXXXXXPPPPP 894
           PP PPP  R              PPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPP        P         P PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 9/29 (31%), Positives = 9/29 (31%)
 Frame = +1

Query: 730 PXXPXXPXXXXPXXXXXXXXXXPPXPPPP 816
           P  P  P    P          PP  PPP
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPPP      PPP        P PPP
Sbjct: 762 PPPPPPPGVAGAGPPP-------PPPPPP 783



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 798 PXXPPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           P   PPP P       PPP        P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
 Frame = +1

Query: 796 PPXPPP----PXPPPXXRXXXPXXXXXXXXXXPPPPP 894
           PP PPP    P P P      P          PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
 Frame = +1

Query: 739 PXXPXXXXPXXXXXXXXXXPPXP----PPPXPPPXXRXXXPXXXXXXXXXXPPPPP 894
           P  P    P          PP P    PPP PPP      P          PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP------PGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPP P        PPP        P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 810 PPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPP      P P        P PPP
Sbjct: 732 PPPPPPAVIVPTPAP-----APIPVPPP 754



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 730 PXXPXXPXXXXPXXXXXXXXXXPPXPPPPXPPP 828
           P  P  P    P             PPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 796 PPXPPPPXP 822
           PP PPPP P
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 799 PXPPPPXPP 825
           P PPPP PP
Sbjct: 236 PAPPPPPPP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 807 PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
           PPPPPPP       PP        P PPP
Sbjct: 10  PPPPPPPGFEPPSQPP--------PPPPP 30



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +3

Query: 798 PXXPPPPPPP--XXXXXXPPP 854
           P  PPPPPPP        PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP 26



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 798 PXXPPPPPPP 827
           P  PPPPPPP
Sbjct: 21  PSQPPPPPPP 30


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 807  PPPPPPPXXXXXXPPPXXXXXXXXPXPPP 893
            PPPPPP       PP         P  PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 568 NGASPHQYRMVRVTRASPCPAHRD 639
           N +SP + R++ V +  PCP+  D
Sbjct: 134 NSSSPERDRLIIVPKEKPCPSFED 157


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 315 LLVYNVVLSPAGFLEDTSRFVALGNRFVTFFRY 217
           L V + +LSP G  ++TS F+ LGN  ++F  Y
Sbjct: 19  LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
 Frame = +3

Query: 807  PPPPPPPXXXXXXP--PPXXXXXXXXPXPP 890
            P PPPPP      P  PP        P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 256 KTRCIFKESGWAKNNVIDKKKVSDYFE 336
           KT  IFK++G+A  NV+D    S  F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 268 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 357
           IF+E G   +N+ D     DY    + DNP
Sbjct: 13  IFEEKGSTSSNISDNCASRDYDVNISSDNP 42


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 798 PXXPPPPPPP 827
           P  PPPPPPP
Sbjct: 942 PAFPPPPPPP 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,121
Number of Sequences: 5004
Number of extensions: 70940
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)