Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L08
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    35   0.013
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    32   0.12 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.38 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   1.5  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   8.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +2

Query: 662  PXXCPPXXXXXXXXXXPXXPXXRPPPXXXPXXPXXPPXPPXPPXXXPXP 808
            P   PP             P   PPP   P  P  PP P  PP   P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 164 NGNIQQDKNFLFNSQNLCYSLRASALGRCVDWLASDKTNXNLK 36
           N  ++  K+FLF   ++  SL  S+LGRC   LAS + + +++
Sbjct: 209 NSELEWFKSFLFKKSSIDNSLLHSSLGRCFSALASAQADKSIE 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
 Frame = +2

Query: 644 PXYRPP--PXXCPPXXXXXXXXXXPXXPXXRPPPXXXPXXPXXPPXPPXPPXXXPXP 808
           P   PP  P   PP          P  P     P      P  PP PP  P   P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/86 (26%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
 Frame = +2

Query: 575 AXTXPPXSGXRXXSXSPXDHCXXPXYRPP--PXXCPPXXXXXXXXXXPXXPXXRPPPXXX 748
           A   PP       S  P      P   PP  P   PP          P  P   P     
Sbjct: 400 APALPPLGNASRTSTPPVP---TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456

Query: 749 PXXPXX-PPXPPXPPXXXPXPXXXXP 823
           P  P   P  PP PP     P    P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/73 (26%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
 Frame = +2

Query: 659 PPXXCPPXXXXXXXXXXPXXPXXRPP--PXXXPXXPXXPPXPPXPPXXXPXPXXXXPXXX 832
           PP   PP          P  P   PP  P   P  P  PP  P  P          P   
Sbjct: 415 PPVPTPPSLPPSAP---PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 833 XXXXPXPXXXXXP 871
               P P     P
Sbjct: 472 AAPAPPPAPAPAP 484


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 5/122 (4%)
 Frame = +3

Query: 15  HLTTREFLKIXIRLVAR*PVYTPP*SGSAQRITQVL*IKKKVFILLNVP--ILTRMST-- 182
           HL          RL    P  TPP S S+  +     +K         P  +++  ST  
Sbjct: 238 HLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTDN 297

Query: 183 LLEVCGP-LSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 359
           ++    P L  P T    E K   P      +R  E+S+ P  + TPQ  ++       K
Sbjct: 298 IIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRLQK 357

Query: 360 RS 365
           R+
Sbjct: 358 RA 359


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/56 (28%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
 Frame = +2

Query: 644 PXYRPPPXXCPPXXXXXXXXXXPXXPXX---RPPPXXXPXXPXXPPXPPXPPXXXP 802
           P   PPP    P          P  P     RPPP   P  P        PP   P
Sbjct: 75  PLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPAYP 130


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +2

Query: 674 PPXXXXXXXXXXPXXPXXRPPPXXXPXXPXXPPXPPXPPXXXPXPXXXXP 823
           PP             P   PPP      P  PP PP      P P    P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +2

Query: 656 PPPXXCPPXXXXXXXXXXPXXPXXRPPPXXXPXXPXXPPXPPXPPXXXP 802
           PPP    P          P  P    PP   P        PP PP   P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 47   DSSCRSLASLHTSLERKRAANNTSFVN*KESFYLVECSHSNQNVHSARSLRTPLTA 214
            D  CR + +L   LER+R     +    + S+Y    S   Q +HS  +LR  + A
Sbjct: 1045 DECCRYIVALSCELERRRLGEEDTKRALELSYYF--ASADLQPMHSIIALRLAINA 1098


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 719 PXXRPPPXXXPXXPXXPPXPPXPP 790
           P   PPP   P     P  PP PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,302
Number of Sequences: 5004
Number of extensions: 38044
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)