Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L05
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...   173   4e-44
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    85   1e-17
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    51   3e-07
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   8.6  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score =  173 bits (420), Expect = 4e-44
 Identities = 81/112 (72%), Positives = 95/112 (84%)
 Frame = +3

Query: 264 AVNPKAYPLADAALTAKILNLVQQATNYKQLXKGXNXATKTLNRGLSELIIMAADAEPLE 443
           +VNPKA+PLAD+ LT +IL+LVQQA++YKQL KG N ATKTLNRG+SE I+MAAD EP+E
Sbjct: 2   SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIE 61

Query: 444 IVLHIPILCEDXNVPYVFVRSKQALGRACGVSRXIISCSITINEGSQLKPXI 599
           I+LH+P+LCED NVPYVFV SK ALGRACGVSR +IS SIT NE S L P I
Sbjct: 62  ILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQI 113


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 39/107 (36%), Positives = 62/107 (57%)
 Frame = +3

Query: 264 AVNPKAYPLADAALTAKILNLVQQATNYKQLXKGXNXATKTLNRGLSELIIMAADAEPLE 443
           A+ P A PLA   L  K++  V++A+  K + +G     K + +G   L+I+A D  P++
Sbjct: 24  ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMD 83

Query: 444 IVLHIPILCEDXNVPYVFVRSKQALGRACGVSRXIISCSITINEGSQ 584
           ++ HIP+LCED NVPY++  SK+ LG A    R   SC + +  G +
Sbjct: 84  VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP-TSCVMIVPGGKK 129


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 25/95 (26%), Positives = 47/95 (49%)
 Frame = +3

Query: 237 IVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLXKGXNXATKTLNRGLSELII 416
           ++N    E A   K   +A+A   A   +    +     +  G N     +    ++L++
Sbjct: 93  LLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVL 152

Query: 417 MAADAEPLEIVLHIPILCEDXNVPYVFVRSKQALG 521
           +A+D +P+E+V+ +P LC+   VPY  V++K  LG
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 301 AASANGYALGFTAASVSAMFTMP 233
           A+ A GY L +TAA ++   T+P
Sbjct: 387 ASKATGYPLAYTAAKIALGHTLP 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,376
Number of Sequences: 5004
Number of extensions: 42340
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)