Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L05
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...   177   7e-45
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    71   1e-12
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    57   2e-08
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    57   2e-08
U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    37   0.023
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score =  177 bits (432), Expect = 7e-45
 Identities = 83/111 (74%), Positives = 97/111 (87%)
 Frame = +3

Query: 267 VNPKAYPLADAALTAKILNLVQQATNYKQLXKGXNXATKTLNRGLSELIIMAADAEPLEI 446
           VNPKA+PLAD  L+ K+++LVQQA NYKQL KG N ATKTLNRG+SE+I+MAADAEPLEI
Sbjct: 6   VNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEI 65

Query: 447 VLHIPILCEDXNVPYVFVRSKQALGRACGVSRXIISCSITINEGSQLKPXI 599
           +LH+P+LCED NVPYVFVRSK ALGRACGV+R +I+ SIT NEGSQLK  I
Sbjct: 66  LLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQI 116


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = +3

Query: 267 VNPKAYPLADAALTAKILNLVQQAT-NYKQLXKGXNXATKTLNRGLSELIIMAADAEPLE 443
           VNP A PLA+  L  K+  L+++A+   K L +G     K L R    + I+A +  P++
Sbjct: 39  VNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPID 98

Query: 444 IVLHIPILCEDXNVPYVFVRSKQALGRACGVSRXII 551
           +  HIP +CE+  +PYV++ S++ LG A G  R  I
Sbjct: 99  VYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSI 134


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +3

Query: 363 GXNXATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDXNVPYVFVRSKQALG 521
           G N  T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 140 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +3

Query: 363 GXNXATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDXNVPYVFVRSKQALG 521
           G N  T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 120 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 318 LNLVQQATNYKQ-LXKGXNXATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDXNVPYV 494
           L  V +A ++   L KG +   K L++  +   ++A + +  + V  +  LC +  +P +
Sbjct: 26  LRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLI 85

Query: 495 FVRSKQALGRACGVSR 542
            V  K+ +G  CG+ +
Sbjct: 86  KVADKKIIGEYCGLCK 101


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 318  LNLVQQATNYKQLXKGXNXATKTLNRGLSELIIMAADAEPLEIVLHIPILC 470
            ++ V   TNY     G + +  T N GLS+L +M     PLE +L I   C
Sbjct: 4552 IDSVATITNYATGHNGTSSSLFTPN-GLSQLEVMQRATNPLEKILEIQTHC 4601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,729
Number of Sequences: 27780
Number of extensions: 246249
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)