Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L03
         (979 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0515 - 3864796-3865425                                           33   0.35 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.4  
07_01_0080 + 587674-588510                                             29   5.6  
11_04_0009 - 12132781-12133272                                         28   9.8  
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258...    28   9.8  
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   9.8  

>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +3

Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPPXXXXXXXXXXXXXXXXXXPXPPXPXXXXXP 788
           PPP  G   PP          PPPPP                  P PP P     P
Sbjct: 62  PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPP 117


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +3

Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPPXXXXXXXXXXXXXXXXXXPXPPXP 770
           PPP      PP   K      PPPPP                  P PP P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593



 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPPXXXXXXXXXXXXXXXXXXPXPPXP 770
           PPP       P    T     PPPPP                  P PP P
Sbjct: 669 PPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPPPPP 718


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPP 698
           PPP  G   PP         GPPPPP
Sbjct: 356 PPPPKGPSPPPPPPPGGKKGGPPPPP 381


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPP 698
           PPP   G  PP          PPPPP
Sbjct: 96  PPPPSSGSPPPPPPPPPPPPPPPPPP 121


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 223 RSSTWAREQRWSCSKPAPERRRRIGSLR 140
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>11_01_0345 +
           2579602-2579836,2581262-2581484,2582822-2583173,
           2583894-2584125,2584683-2585266
          Length = 541

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 272 WTIPSRMFLPIFSIFLKIFHLGS 204
           W +P+  ++P  S+FL +F LGS
Sbjct: 461 WGVPAMPWVPAASVFLNVFLLGS 483


>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 25  IGNSLRFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVLALS 186
           +G+SL FLDI ++   ++S AP++  R   NL  L     + L F    V A+S
Sbjct: 392 VGSSLEFLDISETVVSMVSLAPVI--RRNSNLRCLKAAGCRNLLFEHGEVEAMS 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,906
Number of Sequences: 37544
Number of extensions: 451868
Number of successful extensions: 1278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)