Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_L03
(979 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 33 0.41
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 33 0.41
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.9
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 6.7
Z95559-4|CAB09004.1| 110|Caenorhabditis elegans Hypothetical pr... 28 8.8
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 626 PXGGGXXPPPXXKNXXXXGXPPPP 697
P GGG PPP + G PPPP
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPP 696
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 624 PPXGGGXXPPXXKKTXXXXGPPPP 695
PP GG PP + GPPPP
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 626 PXGGGXXPPPXXKNXXXXGXPPPP 697
P GGG PPP + G PPPP
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPP 696
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 624 PPXGGGXXPPXXKKTXXXXGPPPP 695
PP GG PP + GPPPP
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPP 696
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKNXXXXGXPPPP 697
G PP GG PPP PPPP
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 623 PPXGGGXXPPPXXKNXXXXGXPPPP 697
PP GG PPP G PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPP 698
PPP G PP GPPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPP 745
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPP 761
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKNXXXXGXPPPP 697
G PP GG PPP PPPP
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 623 PPXGGGXXPPPXXKNXXXXGXPPPP 697
PP GG PPP G PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPP 698
PPP G PP GPPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPP 745
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPP 761
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKNXXXXGXPPPP 697
G PP GG PPP PPPP
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 623 PPXGGGXXPPPXXKNXXXXGXPPPP 697
PP GG PPP G PPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 621 PPPXGGGXXPPXXKKTXXXXGPPPPP 698
PPP G PP GPPPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPP 328
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 617 GXPPXGGGXXPPPXXKN-XXXXGXPPPP 697
G PP GG PPP G PPPP
Sbjct: 317 GLPPITGGPPPPPPPGGLPPISGGPPPP 344
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 623 PPXGGGXXPPPXXKNXXXXGXPPPP 697
PP GG PPP G PPPP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 618 GPPPXGGGXXPPXXKKTXXXXGPPPPP 698
GPP GG PP PPPPP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 623 PPXGGGXXPPPXXKNXXXXGXPPPP 697
PP GG PPP G PPPP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 618 GPPPXGGGXXPPXXKKTXXXXGPPPPP 698
GPP GG PP PPPPP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 626 PXGGGXXPPPXXKNXXXXGXPPPP 697
P GGG PPP PPPP
Sbjct: 42 PCGGGFGPPPPPFGPVGYALPPPP 65
>Z95559-4|CAB09004.1| 110|Caenorhabditis elegans Hypothetical
protein Y41E3.8 protein.
Length = 110
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 697 GGGGGPXXXXVFXXXGGXXPPPXGGG 620
GGGGG G PPP GGG
Sbjct: 77 GGGGGGRNIGGLPTSSGVAPPPMGGG 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,989
Number of Sequences: 27780
Number of extensions: 293141
Number of successful extensions: 1074
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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