Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_L02
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.11 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect(2) = 0.11
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 831 PPXPXPPPPP 860
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 864 PXXPXXPPPPP 896
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 855 PPXPXXPXXPPPPPP 899
           PP P     PPPPPP
Sbjct: 338 PPKPA----PPPPPP 348



 Score = 20.6 bits (41), Expect(2) = 0.11
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +3

Query: 840 PXPPPPPXPXXPXXP 884
           P P PPP P     P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +3

Query: 762 PXTPPPPXXXTXPPPPRXPPXXXPPXPXPPPPPXPXXPXXPPPPPP 899
           P +  P    +    P+ P    PP P   PPP    P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG-GPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 810  RXPPXXXPPXPXPPPP 857
            R  P    P P PPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 2.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 882  PPPPPP 899
            PPPPPP
Sbjct: 1859 PPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 2.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 840  PXPPPPP 860
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 880  PPPPPRPP 903
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 883  PPPPRPPP 906
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 840  PXPPPPP 860
            P PPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 846  PPPPPXP 866
            PPPPP P
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 856 GGGGXGXGGXXXGGXRGGGGXVXXXGGGGVXG 761
           GG G    G    G  GG   V    GGG  G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -3

Query: 895 GGGGGXXGXXGXGGGGGXGXG 833
           G  GG        GGGG G G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 771 PPPPXXXTXPPPPRXPPXXXPPXPXPPPPPXPXXPXXPPPPP 896
           P PP       P   P    P     P PP P     P   P
Sbjct: 109 PRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,282
Number of Sequences: 438
Number of extensions: 6969
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)