Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K22
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 468 IRNLSQFTTSESAQAGVPQAPXKSKCHRL 554
           +RN     T  SA  G+P      + HRL
Sbjct: 423 LRNHDMSLTKASATFGIPSTTLWQRAHRL 451


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+     P   +    +G
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 436  LASSGDNAAIPTNPKTTIFPSVK 368
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,845
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)