Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K21
         (1076 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.38 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 770 PXXXPXXPXPPPXXXXXRPPPPXXXPPPPXPXPXPP 877
           P   P     P       PP P   PPP  P   PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 830 PPXXXPPPPXPXPXPPXAA 886
           PP   PPPP P    P +A
Sbjct: 338 PPKPAPPPPPPSSSGPDSA 356



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 796 TPPPXXXRPPPPTXXXP 846
           TPP     PPPP+   P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 824 PPPPXXXPPPP 856
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 830  GGGGRXXXGGGVGGGGG 780
            GGGG     GG+GG GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 830  GGGGRXXXGGGVGGGGG 780
            GGGG     GG+GG GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 781  PPPPPTPP 804
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 784  PPPPTPPP 807
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 848 GGXXXVGGGGRXXXGGGVGGGGG 780
           GG      GG    G   GGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,998
Number of Sequences: 438
Number of extensions: 3847
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36029799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)