Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K18
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.97 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.97 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.0  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        29   1.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   3.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
 Frame = +1

Query: 688 SPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXSXXXXL----THXXXSTXPXPTTCLXXXX 855
           S P+     PP    R    PP PP P  P      L         ST P PT       
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPP-PAIPGRSAPALPPLGNASRTSTPPVPTP----PS 422

Query: 856 XXXXAXPXXPPXXPXTTPPPXLXIXPXPPLPP 951
               A P  PP  P + P   +     PPLPP
Sbjct: 423 LPPSAPPSLPPSAPPSLP---MGAPAAPPLPP 451



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/70 (25%), Positives = 22/70 (31%)
 Frame = +1

Query: 688 SPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXSXXXXLTHXXXSTXPXPTTCLXXXXXXXX 867
           S P P    PPP       PP  PP P  P S    +        P P++ +        
Sbjct: 249 SAPAPPPI-PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAAN 307

Query: 868 AXPXXPPXXP 897
                PP  P
Sbjct: 308 KKRPPPPPPP 317



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/79 (24%), Positives = 20/79 (25%), Gaps = 1/79 (1%)
 Frame = +1

Query: 715 PPPXXXRXXXPPPXPPXPXFPXSXXXXLTHXXXSTXPXPTTCLXXXXXXXXAXPXXPPXX 894
           PP         PP P  P  P S    L      + P                P  P   
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 895 PXTTP-PPXLXIXPXPPLP 948
           P   P PP     P  P P
Sbjct: 464 PAAPPLPPAAPAPPPAPAP 482



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +1

Query: 874 PXXPPXXPXTTPP---PXLXIXPXPPLPP 951
           P  PP  P + PP   P L     PP+PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPP 258


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 21/88 (23%), Positives = 27/88 (30%)
 Frame = +1

Query: 688  SPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXSXXXXLTHXXXSTXPXPTTCLXXXXXXXX 867
            +PP P     PP        PP P     P      +        P P++ +        
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA---APPVPAPSSGIPPVPKPAA 1186

Query: 868  AXPXXPPXXPXTTPPPXLXIXPXPPLPP 951
              P  PP  P   PP        PP+PP
Sbjct: 1187 GVPPVPP--PSEAPPVPKPSVGVPPVPP 1212


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 688  SPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXS 783
            +PP  +   PPP       PP  PP P  P S
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS 1729



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 691  PPTPTXXXPPPXXXRXXXPPPXPPXPXFPXS 783
            PP P    PPP        PP  P P  P S
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 883  PPXXPXTTPPPXLXIXPXPPLPP 951
            P     T PPP + + P P  PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPP 1722


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
 Frame = +1

Query: 688 SPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXSXXXXLTHXXXSTXPXPTTCLXXXXXXXX 867
           S   P+   PP        P   PP P  P               P P++          
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS------LPPP 174

Query: 868 AXPXXPPXXPXTTPPPXLXIXPXPP-LPP 951
           A P  P   P + P     + P PP +PP
Sbjct: 175 AQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 691 PPTPTXXXPPPXXXRXXXPPPXPPXP 768
           PP P    PPP       PPP PP P
Sbjct: 761 PPPPP---PPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect(2) = 1.0
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 694 PTPTXXXPPPXXXRXXXPPPXPPXP 768
           P P     PP       PPP PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
 Frame = +1

Query: 691 PPTPTX----XXPPPXXXRXXXPPPXPPXP 768
           PP P        PPP       PPP PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 21.4 bits (43), Expect(2) = 1.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 883 PPXXPXTTPPPXLXIXPXPPLPP 951
           PP  P   PP      P PP PP
Sbjct: 761 PPPPPP--PPGVAGAGPPPPPPP 781


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 124 FQLAEFTDPPLPDRSGMCGMHSR*HALSDVTSSY 225
           F+LA+FTDP LP     C + S   AL+++   Y
Sbjct: 143 FELAQFTDPDLPP-FAKCTIESSPEALNNIILKY 175


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 240 LKVPFVARCDVTKGMLSGMHSAHSRSIRQRRISKFG*LKPKC 115
           L+VPF  R + T   LSG+HS     +R  +   +G L  +C
Sbjct: 146 LEVPFRKRSESTSSSLSGLHS----DLRPLKTELYGQLNSEC 183


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
 Frame = +1

Query: 685  YSPPTPTXXXPPPXXXRXXXPPPXPPXPXFPXSXXXXLTHXXXSTXPXP-TTCLXXXXXX 861
            Y PPT +    PP        P  P  P  P +    ++         P T         
Sbjct: 935  YHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTV 994

Query: 862  XXAXPXXPPXXPXTTPPPXLXIXPXPPLPP 951
              A    P       PPP        PLPP
Sbjct: 995  NPAHTYKPHGGSQIVPPPKQPANRVVPLPP 1024


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 341 NDLSHRQWLRSPAAGTSGTCLRNMPAPLHRLTQS*RC 231
           +D+  + W+  PA    G C  N+P   H + +S RC
Sbjct: 40  SDVCFQPWIHDPALWKQGLCDSNVPTQEHAV-KSLRC 75


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 950 GGRGGXGXMXRXGGGVVXGXXGGXXGXAGG-G*GXGXKQVV 831
           G RGG     R G G   G  GG  G +GG G   G  +V+
Sbjct: 34  GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVI 74



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 950 GGRGGXGXMXRXGGGVVXGXXGGXXGXAGGG*G 852
           G RGG G      GG   G  G   G  GG  G
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 950 GGRGGXGXMXRXGGGVVXGXXGGXXGXAGGG*G 852
           GGRGG     R G     G  GG  G  GG  G
Sbjct: 30  GGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 947 GRGGXGXMXRXGGGVVXGXXGGXXGXAGGG 858
           GRGG G      GG   G  G   G  GGG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGG 165


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 691 PPTPTXXXPPPXXXRXXXPPPXPPXPXF 774
           PP      PPP        PP PP P +
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 950 GGRGGXGXMXRXGGGVVXGXXGGXXGXAGGG 858
           GGRGG G     GGG   G  G   G    G
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 7.8
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
 Frame = +1

Query: 676 HTLYSPPT----PTXXXPPPXXXRXXXPPPXPPXP 768
           +++ SPP     P+   P         PPP PP P
Sbjct: 162 NSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 886 PXXPXTTPPPXLXIXPXPPLPP 951
           P  P T  P      P PP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPP 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,214
Number of Sequences: 5004
Number of extensions: 40227
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)