Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K17
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     34   0.19 
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    30   2.3  
03_01_0515 - 3864796-3865425                                           29   4.1  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    29   7.1  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.4  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     28   9.4  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 29/97 (29%), Positives = 31/97 (31%)
 Frame = -2

Query: 904 GXXXRGGXVXXXRGGXQXXXVTGXGXXGXGWXGGXWXXQXXGWEXRDXTXGXEIXXSXGY 725
           G   RGG      GG +     G    G G  GG       G+       G E     GY
Sbjct: 39  GVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGG-----RGYGGGGGGGGYESGGGRGY 93

Query: 724 GGKXHXSXREKGGQVSGKRQGRNRRSAXGXXPGGNAW 614
           GG       E GG       GR   S  G   GGN W
Sbjct: 94  GGGGRGY--ESGGGRGPGGGGRGHESGGGGGRGGNVW 128



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
 Frame = -2

Query: 892 RGGXVXXXRGGXQXXXVTGXGXXGXGWXGGXWXXQXXGWEXRDXTXGXEIXXSXGYGGKX 713
           RGG     RGG       G G  G G  GG       G    +   G       G GG+ 
Sbjct: 20  RGGGGGDGRGGGYG----GAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGGRG 75

Query: 712 HXSXREKGGQVSGKRQ-----GRNRRSAXGXXPGG 623
           +      GG  SG  +     GR   S  G  PGG
Sbjct: 76  YGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGG 110


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -2

Query: 889 GGXVXXXRGGXQXXXVTGXGXXGXGWXGGXWXXQXXGWEXRD 764
           GG      GG +     G    G G  GG W  +  GW+ RD
Sbjct: 237 GGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWNSRPGGWDRRD 278


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 720 PPXPXLXXISXPXVXSLXSQPXXCXXQXPPXXPXPXXPXPVTXXX*XPP 866
           PP P     S P    L   P       PP  P P  P PV      PP
Sbjct: 72  PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 832 GXXGXGWXGGXWXXQXXGWEXR 767
           G  G G  GG W  Q  GWE R
Sbjct: 405 GGGGGGGRGGSWRGQKSGWEAR 426


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKXSXRP 494
           P PRS  RC      GCG R Q TQR     P N  IT   E TC    +  P
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIP 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,712,133
Number of Sequences: 37544
Number of extensions: 373307
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)