Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K17
         (941 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    37   0.018
AF039048-2|AAB94238.1|   85|Caenorhabditis elegans Hypothetical ...    29   4.8  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    28   8.4  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 24/90 (26%), Positives = 29/90 (32%)
 Frame = -2

Query: 892 RGGXVXXXRGGXQXXXVTGXGXXGXGWXGGXWXXQXXGWEXRDXTXGXEIXXSXGYGGKX 713
           RGG     RGG       G G    GW G        GW       G +   S G+GG  
Sbjct: 67  RGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQ--GGSQGGSSGGWGGSS 124

Query: 712 HXSXREKGGQVSGKRQGRNRRSAXGXXPGG 623
                   G   G++ G +     G   GG
Sbjct: 125 RSDSGSGQGGWGGQQGGNSNAGGWGGSQGG 154



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 904 GXXXRGGXVXXXRGGXQXXXVTGXGXXGXGWXGGXWXXQXXGW 776
           G   +GG     RGG Q     G G  G GW GG       GW
Sbjct: 228 GWGNQGGQQGGGRGGQQGPGGWGGGGRGGGW-GGWGRGSRWGW 269


>AF039048-2|AAB94238.1|   85|Caenorhabditis elegans Hypothetical
           protein F16B4.7 protein.
          Length = 85

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 838 GXGXXGXGWXGGXWXXQXXGWEXRDXTXGXEIXXSXGYGG 719
           G G  G G  GG W  Q   ++    + G +     G+GG
Sbjct: 34  GGGDFGGGGSGGQWGSQSSSFQQSQSSGGFQNNAGGGFGG 73


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/62 (29%), Positives = 22/62 (35%)
 Frame = -2

Query: 838 GXGXXGXGWXGGXWXXQXXGWEXRDXTXGXEIXXSXGYGGKXHXSXREKGGQVSGKRQGR 659
           G G  G G+  G       G   RD           GYGG         GG   G+R+ R
Sbjct: 219 GGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGGGRRRSR 278

Query: 658 NR 653
           +R
Sbjct: 279 SR 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,541
Number of Sequences: 27780
Number of extensions: 284415
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)