Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_K15
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.089
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 0.67
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 7.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Frame = +2
Query: 344 PPPPPPPXX*K--KKXXGGG----XXPPPPXXXXXXPXXXGXVXLXPXXXXXKXPPPPPP 505
PPPPPPP K G G PPPP G + L P PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPP--QGRSAPPPPPP 366
Query: 506 XIFXXXXXXPPP 541
PPP
Sbjct: 367 RSAPSTGRQPPP 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 403 PPPPXPXXXXPXXGGXGXXXXXXXXXKXXPPPPPPNFXXXXXXPPPPK 546
PPPP P G PPPPPP P PP+
Sbjct: 311 PPPPPPPSRRNR--GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ 356
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/80 (26%), Positives = 21/80 (26%), Gaps = 2/80 (2%)
Frame = +2
Query: 308 PXGKXFXXXXFXPPPPPPPXX*KKK--XXGGGXXPPPPXXXXXXPXXXGXVXLXPXXXXX 481
P G PPPPPP G PPP P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385
Query: 482 KXPPPPPPXIFXXXXXXPPP 541
PP PPP I PP
Sbjct: 386 SNPPAPPPAIPGRSAPALPP 405
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/53 (26%), Positives = 15/53 (28%)
Frame = +2
Query: 347 PPPPPPXX*KKKXXGGGXXPPPPXXXXXXPXXXGXVXLXPXXXXXKXPPPPPP 505
PP PP G PP P P + P PPP P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 402 PPPPXTXXXXXPPXXXXXXXXPXXXXXKXPPPPPPXFFXXXXXPPPP 542
PPPP P P PPPPPP PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 34.3 bits (75), Expect = 0.022
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 402 PPPPXTXXXXXPPXXXXXXXXPXXXXXKXPPPPPPXFFXXXXXPPPP 542
PPPP P P PPPPPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 33.9 bits (74), Expect = 0.029
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +1
Query: 373 KKKXIXGGXXPPPPXPXXXXPXXGGXGXXXXXXXXXKXXPPPPPPNFXXXXXXPPPP 543
++K + PPPP P PPPPPP PPPP
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 344 PPPPPPPXX*KKKXXGGGXXPPPP 415
PPPPPPP G G PPPP
Sbjct: 761 PPPPPPPPG----VAGAGPPPPPP 780
Score = 29.1 bits (62), Expect = 0.83
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Frame = +1
Query: 403 PPPPXPXXXXPXXGGXGXXXXXXXXXKXXPPPPPP---NFXXXXXXPPPP 543
PPPP P P PPPPPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 402 PPPPXTXXXXXPPXXXXXXXXPXXXXXKXPPPPPPXFFXXXXXPPPP 542
PPP P P PPPPP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +2
Query: 344 PPPPPPPXX*KKKXXGGGXXPPPPXXXXXXPXXXGXVXLXPXXXXXKXPPPPPPXI 511
PPPPPP PPP P + PPPPPP +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA--GAGPPPPPPPPPAV 785
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.089
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 490 PPPPPPNFXXXXXXPPPP 543
PPPPPP F PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 489 PPPPPPXFFXXXXXPPPP 542
PPPPPP F PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 489 PPPPPPXFFXXXXXPPPP 542
PPPPPP F PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 490 PPPPPPNFXXXXXXPPPP 543
PPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 344 PPPPPPPXX*KKK 382
PPPPPPP KK+
Sbjct: 24 PPPPPPPGYVKKR 36
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +2
Query: 344 PPPPPPPXX*KKKXXGGGXXPPPPXXXXXXPXXXGXVXLXPXXXXXKXPPPPPPXI 511
P PPPPP K P G + P PPPPPP +
Sbjct: 905 PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPP-----PPPPPPLV 955
Score = 25.8 bits (54), Expect(2) = 0.67
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 338 FXPPPPPPP 364
F PPPPPPP
Sbjct: 944 FPPPPPPPP 952
Score = 21.8 bits (44), Expect(2) = 0.67
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 347 PPPPPPXX*KKKXXGGGXXPP 409
PPPPPP GG P
Sbjct: 945 PPPPPPPPPLVSAAGGKFVSP 965
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = +3
Query: 408 PPXTXXXXXPPXXXXXXXXPXXXXXKXPPPPPPXFFXXXXXPPPP 542
PP PP P PP PP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 414 GGGGXXPPPNXFFF*XXGGGGGGG 343
GGG PPP F GG GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 344 PPPPPPPXX*KKK 382
PPPPPPP +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,045
Number of Sequences: 5004
Number of extensions: 27166
Number of successful extensions: 304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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