Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_K13
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 142 4e-34
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 133 2e-31
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 118 6e-27
05_07_0223 - 28496877-28497398 30 2.2
02_04_0430 + 22834405-22834839 29 5.0
03_02_0807 + 11398845-11399999 29 6.6
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 8.8
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 8.8
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 9.1
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 142 bits (343), Expect = 4e-34
Identities = 74/169 (43%), Positives = 98/169 (57%), Gaps = 4/169 (2%)
Frame = +3
Query: 189 LQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVF 356
L++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+ F
Sbjct: 54 LEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCF 112
Query: 357 KQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENXENSDEICGAVVN 536
K I P WED GG+W S + + D WL +L +IGE + DEICGAVV+
Sbjct: 113 KNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAVVS 168
Query: 537 VRPKVDKIAXWTADAMKQHATIEIGKKLKEXLGIHXQIGFPVHRDTMVK 683
VR K ++IA WT +A + A I IGK+ KE L IGF VH D + K
Sbjct: 169 VRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSK 217
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 133 bits (322), Expect = 2e-31
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Frame = +3
Query: 186 RLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVF 356
+L QW+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +F
Sbjct: 31 KLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLF 90
Query: 357 KQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENXENSDEICGAVVN 536
K G+ P WED GG+W + +K T L+ WL+ ++ LIGE + S+EICG V +
Sbjct: 91 KAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVAS 147
Query: 537 VRPKVDKIAXWTADAMKQHATIEIGKKLKEXLGIHXQIGFPVHRD 671
VR + DK+A WT A + + IGKK KE + + ++ + H D
Sbjct: 148 VRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 118 bits (284), Expect = 6e-27
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Frame = +3
Query: 189 LQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFK 359
L+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +FK
Sbjct: 51 LRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHLFK 110
Query: 360 QGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENXENSDEICGAVVNV 539
+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V++V
Sbjct: 111 EGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVLSV 166
Query: 540 RPKVDKIAXWTADAMKQHATIEIGKKLKEXL 632
R D ++ W +A A + + +K L
Sbjct: 167 RFNEDILSVWNRNASDHQAVMTLRDSIKRHL 197
>05_07_0223 - 28496877-28497398
Length = 173
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 715 TVYGLLVAXLXLTMVSLCTGKPIWXCIPXCSFSFFPISIVACCFIASAV 569
T+ G +VA + L ++L T PIW + F ++ AC F+ AV
Sbjct: 69 TLTGAVVALIFLGPIALLTS-PIWVPVAVALFVLAAAALSACAFVVVAV 116
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 430 FSRLISHLPPILLASSSHIGRM 365
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>03_02_0807 + 11398845-11399999
Length = 384
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -2
Query: 239 CFVSVIVVKPETPLVL*XGALIKNXRGHLRVTVGLRFSGSRPLYFFCSISSHILRG*RCK 60
CF +V KP T L L KN RG ++ T ++ + + P +++ S+ + R
Sbjct: 185 CFTAVSGRKPSTVLFDLPADLYKNGRGTVQTTPLIK-NPAHPTFYYLSLKGITVGSTRLP 243
Query: 59 FPTKRQILRN 30
P L+N
Sbjct: 244 VPESAFALKN 253
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 304 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 447
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 327 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 470
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 9.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 298 CTIILSYRQNFAKVMTMQYSSKAFVLC 378
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 364 AFVLCGKTMLTRWEEDGLSVLRKN 435
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,825
Number of Sequences: 37544
Number of extensions: 367990
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -