Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K11
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.077
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.41 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   6.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 21/56 (37%), Positives = 21/56 (37%)
 Frame = -1

Query: 916 GXXGXXXXGXGXXXLAGXGVXXDG*XGIGGXXWGXXGGGGGXQAXGGXGXDGXPXW 749
           G  G    G G     G G    G  G GG   G  GG GG    GG G  G P W
Sbjct: 221 GGHGGFGGGPGGFE-GGPGGFGGGPGGFGGGLGGFGGGPGGF--GGGPGGHGGPGW 273



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 22/63 (34%), Positives = 22/63 (34%)
 Frame = -1

Query: 943 GGKXGXXXAGXXGXXXXGXGXXXLAGXGVXXDG*XGIGGXXWGXXGGGGGXQAXGGXGXD 764
           GG  G    G  G    G G     G G    G  G GG   G  GGG G    G  G  
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFG-GGPGGFEGGPGGFGGGP-GGFGGGLGGFGGGPGGFG 262

Query: 763 GXP 755
           G P
Sbjct: 263 GGP 265


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 19/69 (27%), Positives = 19/69 (27%)
 Frame = +3

Query: 714  APSHXXXPVXSXXFGXPSXPXPPXAXXPPPPPXXXXXXXXXXXXXSXXTPXPAXXXXPXP 893
            APS    PV     G P  P P  A   P P                 TP       P P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232

Query: 894  XXXXPXXPA 920
                P  PA
Sbjct: 1233 TAKAPPVPA 1241



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/67 (25%), Positives = 18/67 (26%)
 Frame = +3

Query: 717  PSHXXXPVXSXXFGXPSXPXPPXAXXPPPPPXXXXXXXXXXXXXSXXTPXPAXXXXPXPX 896
            PS    PV +   G P  P P     P PPP                 P       P P 
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223

Query: 897  XXXPXXP 917
               P  P
Sbjct: 1224 AGLPPVP 1230


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 714 APSHXXXPVXSXXFGXPSXPXPP----XAXXPPPPP 809
           AP+    P  +   G P  P PP     A  PPPPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -1

Query: 868 GXGVXXDG*XGIGGXXWGXXGGGGGXQAXGGXGXDG 761
           G G    G  G GG   G  GGG G  A GG G  G
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGG-ARGGRGGRG 51


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 471 AFCSXVLSXVIPLILWITVLXPLSE 397
           AFCS V+   +PL    T+L P SE
Sbjct: 304 AFCSFVIVYELPLFFETTLLMPSSE 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,990
Number of Sequences: 5004
Number of extensions: 38547
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)