Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_K10
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.070
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.16
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 31 0.28
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.86
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.070
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 706 PPXPPPPXXPPXXXXXXXPPXPPP 777
P PPPP PP PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.49
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 700 PXPPXPPPPXXPPXXXXXXXPPXPPP 777
P PP PPP PP PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQP----PPPPPP 30
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 706 PPXPPPPXXPPXXXXXXXPPXPPP 777
PP PPP PP P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 700 PXPPXPPPPXXPPXXXXXXXPPXPPP 777
P PPPP PP PP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 700 PXPPXPPPPXXPPXXXXXXXPPXPPP 777
P P P P PP PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 709 PXPPPPXXPPXXXXXXXPPXPPP 777
P PPPP PP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 280 AIAGPALINPSRTXRPTFSIFLKSFHLGSGAALTAP 173
AIA P +I+P + RP S+F+KS A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 700 PXPPXPPPPXXPPXXXXXXXPPXP 771
P PP PPPP PP P P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 700 PXPPXPPPP 726
P PP PPPP
Sbjct: 189 PPPPPPPPP 197
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +1
Query: 709 PXPPPPXXPPXXXXXXXPPXPPP 777
P PP P PP PPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPP 243
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 256 NPSRTXRPTFSIF----LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEF 92
N S +P F L+S H L S + T PR N + K + P ++ F
Sbjct: 274 NTSSLEKPKFDYLPPNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAF 333
Query: 91 KIPIQYRSTRTLRMIK 44
+I + Y TR L I+
Sbjct: 334 RISVMYAVTRILPAIQ 349
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +1
Query: 706 PPXPPPPXXPP-XXXXXXXPPXPPP 777
PP PPP PP PP PPP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPP 1213
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +1
Query: 700 PXPPX--PPPPXXPPXXXXXXXPPXPP 774
P PP PPPP PP P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 706 PPXPPPPXXPPXXXXXXXPPXPP 774
PP P PP PP P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,625
Number of Sequences: 5004
Number of extensions: 43369
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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