Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_K06
(986 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +2
Query: 608 SLPXPPPXPP----XPXTPPXPLPXXTPP 682
S+P PP PP P PP PLP + P
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = +2
Query: 608 SLPXPPP----XPPXPXTPPXPL-PXXTPP 682
S P PPP PP P PP P P PP
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 682 RGGXXXERGGGXXGXGGXRGGXR 614
RGG RGG G GG RGG R
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGR 40
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 682 RGGXXXERGGGXXGXGGXRGGXR 614
RGG RGG G GG +GG +
Sbjct: 50 RGGARGGRGGSSGGRGGAKGGAK 72
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 679 GGXXXERGGGXXGXGGXRGG 620
GG RGGG G G RGG
Sbjct: 30 GGRGGARGGGRGGARGGRGG 49
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 623 PPXPPXPXTPPXPLPXXTPP 682
PP P PP P+P TPP
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPP 1051
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/78 (24%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Frame = +2
Query: 461 PXDPXAXXXPPNXXXAXXCPPXSXGLXPPXRASXXXTAXXXXXXXXXXXSLPXP----PP 628
P P PP + PP P A +P P PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 629 XPPXPXTPPXPLPXXTPP 682
PP PP P P P
Sbjct: 1191 VPPPSEAPPVPKPSVGVP 1208
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 608 SLPXPPPXPPXPXTPPXPLPXXTPP 682
S+ PP P PP P P PP
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPP 1122
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +2
Query: 611 LPXPPPXPPXPXTP-PXPLPXXTPP 682
L PPP PP P P P P PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPP 753
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 608 SLPX--PPPXPPXPXTPPXPLPXXTPP 682
SLP PPP PP P P P PP
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 620 PPPXPPXPXTPPXPLPXXTPP 682
PPP PP PP P PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +2
Query: 611 LPXPPPXPPX-PXTPPXPLPXXTPP 682
+P PP PP P PP P P P
Sbjct: 463 MPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 608 SLPXPPPXPPXPXTPPXPLPXXTP 679
S+P PP P P P P P P
Sbjct: 663 SVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 608 SLPXPPPXPPXPXTPPXPLPXXTP 679
S+P PP P P P P P P
Sbjct: 573 SVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 608 SLPXPPPXPPXPXTPPXPLPXXTP 679
S+P PP P P P P P P
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAP 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,392
Number of Sequences: 5004
Number of extensions: 24260
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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