Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K05
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +2

Query: 533 PXAPPPLNEHHKNPTXQSXVATPXRTXTIPXXFP--LXXS-PPAXXCSXPXRLPDTCPAX 703
           P APPP       P     +    RT T P   P  L  S PP+   S P  LP   PA 
Sbjct: 388 PPAPPPAIPGRSAPALPP-LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA 446

Query: 704 SPLP 715
            PLP
Sbjct: 447 PPLP 450



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
 Frame = +2

Query: 539 APPPLNEHHKNPTXQSXVATPXRTXTIPXXFPLXXSPPAXXCSXPXR--LPDTCPAXSPL 712
           A PPL    +  T       P    + P   P   +PP+     P    LP + P   PL
Sbjct: 402 ALPPLGNASRTSTPPVPTP-PSLPPSAPPSLP-PSAPPSLPMGAPAAPPLPPSAPIAPPL 459

Query: 713 PXXLXPFSXLPP 748
           P  +     LPP
Sbjct: 460 PAGMPAAPPLPP 471


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 709 PSXXPXPFLLXPXXXXXPXPXXXPXXPXXXXXXXXPPXPPXP 834
           P+  P P  + P       P   P  P        PP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +3

Query: 690 PVPPXLPFXXXXXLSPXSXXXXXPXXXXXPXPPXXXXXXXXXPPPXPP 833
           P PP          +P       P     P PP         PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,314
Number of Sequences: 5004
Number of extensions: 41910
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)