Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K03
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-20|AAC17803.2|  309|Caenorhabditis elegans Hypothetical...    31   1.1  
AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   4.5  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   4.5  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   7.9  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   7.9  

>AF068713-20|AAC17803.2|  309|Caenorhabditis elegans Hypothetical
           protein T24A6.16 protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 575 WSLPAESNLKSYSYLNFSETRQ--RYEIRRTFVSEKARRTERVYLPPKTHLFRCYEC 739
           W+    S  K +++LN SE  +  +  +R  FV +  RR   +YL    +   CY+C
Sbjct: 94  WATSNRSCTKEFNFLNPSEVLKIDKNTVRFAFVRDPFRRFVSLYLNKCVNKNECYDC 150


>AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical
           protein F40C5.1 protein.
          Length = 325

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 575 WSLPAESNLKSYSYLNFSETRQ--RYEIRRTFVSEKARRTERVYLPPKTHLFRCYEC 739
           W+    S  K +++LN SE  +  +  +R  FV +  RR   +YL    +   CY+C
Sbjct: 94  WATSNRSCTKEFNFLNPSEVLKIDKNTVRFAFVRDPFRRFVSLYLNKCVNKNECYDC 150


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 166 KRGKGEGKVARASFVGRQGAPRAGEVGFG 80
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 166 KRGKGEGKVARASFVGRQGAPRAGEVGFG 80
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 626  SETRQRY-EIRRTFV--SEKARRTERVYLPPKTHLFRCYECNWESE 754
            S+  +RY EI++T +  +E A++T+    PPK  +FR   C  + E
Sbjct: 1923 SDQCKRYMEIKQTDMPPAEAAKKTKEFRCPPKEQMFRLLMCKVKEE 1968


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 626  SETRQRY-EIRRTFV--SEKARRTERVYLPPKTHLFRCYECNWESE 754
            S+  +RY EI++T +  +E A++T+    PPK  +FR   C  + E
Sbjct: 2044 SDQCKRYMEIKQTDMPPAEAAKKTKEFRCPPKEQMFRLLMCKVKEE 2089


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,780
Number of Sequences: 27780
Number of extensions: 303358
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)