Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K02
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    35   0.089
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical ...    30   1.9  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    28   7.7  

>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
 Frame = -1

Query: 632  KQEXRLASGISRSGSDTASASFVSGTHPTNGXTSSGDI*RRXTEYLVETSRCLAGVSPSL 453
            +QE +  +G +R  S +     V  TH   G  S GD+ +R   + +   R   G S  L
Sbjct: 1528 RQELKAVTGSARDLSGSR-VDRVIPTHSLRGAKSVGDLSKRQPNWDISPYRDTPGPSSFL 1586

Query: 452  LLQLPNHHIWDSFSXPSEL*ERASTSCPKHRLTPL*TLHSPAS-WSLSQYH 303
                P+ H+  + + P     R+ +      L PL   HSP S WS   +H
Sbjct: 1587 PPITPSRHVRTAANSPQPRHRRSDSHFSMTSL-PL-IAHSPTSFWSSPHFH 1635


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 287 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 391
           +LD  CGTG+ S ++++ G   V VD S  ML+ A
Sbjct: 57  LLDIGCGTGMSSEVILDAGHMFVGVDVSRPMLEIA 91


>AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical
           protein C18H7.9 protein.
          Length = 144

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 LLKNN-GCKTVLDAACGTGIDSMMLVNEGF-KVVSVDASDKMLKH 388
           LLK N   K VLD  CG G++S   +  G  KVV  D S +M+++
Sbjct: 31  LLKYNLKDKKVLDIGCGNGLNSTTFLQWGARKVVGFDNSQEMIEN 75


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 290 LDAACGTGIDSMMLVNEGFKVVSV 361
           +D ACGTG+ + +L N G K +SV
Sbjct: 355 VDKACGTGLTTALLSNLGKKQISV 378


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 116  QVFHSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLD 295
            +V    SL   S   KD   + +A K   K      ++  +Y D L GL++N     +LD
Sbjct: 1919 EVITGESLSDASSSAKDATTN-EAQKKGGKKPKKWFKKMSSYTDVLKGLMQNRYPVALLD 1977

Query: 296  -AACGTGIDSMM 328
             AA G  +D MM
Sbjct: 1978 PAAAGIEMDEMM 1989


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 310 STTSGVQNSLAAVVLQETDQEVFVVLRSLITISDEL-VPCFCRFAVSVLIFYTLG 149
           +T  G+ N+L      + D EV + L      +DE  + C  RF V  LIF T+G
Sbjct: 270 NTPYGI-NALMPFDHNDMDPEVVMALLKKSLATDEFYLDCIMRFTVICLIFITVG 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,325
Number of Sequences: 27780
Number of extensions: 359157
Number of successful extensions: 1067
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)