Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K01
         (1098 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.51 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.68 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.51
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 738 GGXXPPPPPPXPXXXPXXPPPPXPPXXPPXXKXPPXP 848
           G   P P P      P    PP P   PP    P  P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 996  PXXXPXXXXPPXXXXXXXPPXPPXXPPPXPP 1088
            P   P     P       PP P   PPP  P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 1006 PXXXPPPPPXXXXXXXPPXPXXXPPXPPPP 1095
            P   P   P       PP P   PP   PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 762 PPXPXXXPXXPPPPXPPXXPP 824
           PP P   P   PP  PP  PP
Sbjct: 39  PPNPSQGP---PPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 847 GXGGCXCXGGXXGGXGGGGXXGXXXGXGGGGGG 749
           G G     G   G  GG    G   G GGGG G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 847 GXGGCXCXGGXXGGXGGGGXXGXXXGXGGGGG 752
           G  G    GG   G  GG         GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 432 PPPPPXRXGGXFF 394
           PPPPP R G   F
Sbjct: 376 PPPPPIRGGEWTF 388


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 729  TAXGGXXPPPPPPXP 773
            TA     PPPPPP P
Sbjct: 1348 TAWRQQQPPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 792 PPPPXPPXXPPXXKXP 839
           PP P PP  PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 738  GGXXPPPPPP 767
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.155    0.568 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,909
Number of Sequences: 438
Number of extensions: 9196
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36873306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)