Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J24
         (1006 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.59 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
 Frame = +3

Query: 534  PPPXXPXXXXPXLPXSXXSXPPXXPXPPXPLTPXXXXXPXXSPXPXXXP--XXPSAXXXP 707
            PP   P    P +P      PP  P    P  P         P P   P    PSA   P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 708  XXXPXASGRXXP 743
               P A     P
Sbjct: 1229 VPVPTAKAPPVP 1240



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/66 (24%), Positives = 18/66 (27%)
 Frame = +3

Query: 534  PPPXXPXXXXPXLPXSXXSXPPXXPXPPXPLTPXXXXXPXXSPXPXXXPXXPSAXXXPXX 713
            PP   P    P +P    + PP       P  P         P P   P  P        
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 714  XPXASG 731
             P  SG
Sbjct: 1152 VPAPSG 1157


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
 Frame = +3

Query: 528 SXPPPXXPXXXXPXLPXSXX-SXPPXXPXPPXPLTPXXXXXPXXSPXPXXXPXXPSAXXX 704
           S PP   P    P  P S   S PP  P       P     P   P P   P  P     
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 705 PXXXPXASGRXXPRAP 752
               P A     P AP
Sbjct: 473 APAPPPAPA-PAPAAP 487



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
 Frame = +3

Query: 534 PPPXXPXXXXPXLP----XSXXSXPPXXPXPPXPLTPXXXXXPXXSPXPXXXPXXPSAXX 701
           PPP  P    P LP     S  S PP  P PP  L P        S  P      P+A  
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPP-VPTPP-SLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 702 XPXXXPXA 725
            P   P A
Sbjct: 449 LPPSAPIA 456


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 537  PPXXPXXXXPXLPXSXXSXPPXXPXPPXPLTPXXXXXPXXSPXP 668
            PP  P    P    +    PP    PP P  P     P  +P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 606  PXPPXPLTPXXXXXPXXSPXPXXXPXXPSAXXXPXXXPXA 725
            P  P    P     P   P P   P  PSA   P   P A
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 23/75 (30%), Positives = 25/75 (33%)
 Frame = +3

Query: 528 SXPPPXXPXXXXPXLPXSXXSXPPXXPXPPXPLTPXXXXXPXXSPXPXXXPXXPSAXXXP 707
           S  PP  P    P  P S    P   P  P    P     P   P P   P  PS+   P
Sbjct: 121 SAAPPSAP---APPTPQSELRPPTSAPPRPSIPPPSPASAP---PIPSKAPPIPSS-LPP 173

Query: 708 XXXPXASGRXXPRAP 752
              P A  +  P AP
Sbjct: 174 PAQPAAPVKSPPSAP 188


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
 Frame = +3

Query: 534 PPPXXPXXXXPXLPXSXXSXPPXXP---XPPXPLTPXXXXXPXXSPXPXXXP 680
           PPP  P    P    +    PP  P    PP P  P         P P   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,265
Number of Sequences: 5004
Number of extensions: 11522
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)