Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J22
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.68 
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   3.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   4.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   4.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   4.8  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   6.4  

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 299 KSKELSGVRETSITLPRKLGYQKLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIE 469
           KSK     ++  + +P+K G  K+         + S KK  L+ KN    EDT D+E
Sbjct: 80  KSKSKDSSKKEPVVVPKK-GTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVE 135


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 481 LFINFYIYCILTHYLV-LSQKYIFLNTV*VIFI 386
           LFI   ++C+LT Y V LSQ  +  + + V+F+
Sbjct: 475 LFIRLALFCVLTTYNVSLSQTILLTSIMSVVFL 507


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 362 QKLLNIICDKYN-LNSIKKNILLAKNEVVCEDTVDIEINEQDNL 490
           ++L ++   +++ LNS KK   +   ++  ED+++  +N+++NL
Sbjct: 415 KELFSLSASEFDKLNSEKKTFEILSTDIPAEDSMNSLLNDEENL 458


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 178 KKTLTLLPFKTEDTAGRLTMVNYGNRKYRRYCNSEAIVFC*IKRIVG 318
           KKTL L   K  D  G+L    +   KY     +E  V+  IK I G
Sbjct: 506 KKTLKLAENKEHDYIGKLQEREHALTKYESSLKAELEVYKQIKEIYG 552


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 662 FFLQNCL*LCQ*TMKLHRSYHQLQVHLFPRLTVDLLXILY 543
           F L N L LC+  +++ R  H+L  HL P L ++LL I Y
Sbjct: 695 FLLDNFLLLCKIKIQMKRRVHKL--HLRP-LPLELLSISY 731


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 738 LTSSQIVFIAFMAIDS*ASYSSLXTFFPSKLSLVVPINNEI 616
           + SS I  + F+ +D  AS SS    FPS   LVV  N+E+
Sbjct: 686 VNSSMIDRVGFIVVDKSASNSSFGRSFPSCTVLVV--NSEL 724


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 733 VITNSF-YRFYGHRFVGLIFQPXYLFSFKIVSSC 635
           +I  SF +RFYG   +G I     +F F +  SC
Sbjct: 50  LIIGSFPFRFYGLNTIGKIVYILQIFLFSLFGSC 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,927
Number of Sequences: 5004
Number of extensions: 51639
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)