Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J19
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   148   9e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   148   1e-36

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (359), Expect = 9e-37
 Identities = 70/125 (56%), Positives = 87/125 (69%)
 Frame = +2

Query: 89  FXTPLMGLWDSIPKRGPVVIVVRSRPFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 268
           F  P  G    +P++       + + FPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 269 KINKKEIVEAVTIIETPPMVCVXVVXYIETPHGLRALLXVWAXHXSDXCRRXXYQXWXHC 448
           K++K+EI+EAVTIIETPPMV V VV Y+ETP GLR+L  VWA H S+  +R  Y+ W   
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 449 XXXAF 463
              AF
Sbjct: 126 KKKAF 130


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (358), Expect = 1e-36
 Identities = 69/125 (55%), Positives = 87/125 (69%)
 Frame = +2

Query: 89  FXTPLMGLWDSIPKRGPVVIVVRSRPFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 268
           F  P  G    +P++       + + FPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 269 KINKKEIVEAVTIIETPPMVCVXVVXYIETPHGLRALLXVWAXHXSDXCRRXXYQXWXHC 448
           K++K+EI+EAVT+IETPPMV V VV Y+ETP GLR+L  VWA H S+  +R  Y+ W   
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 449 XXXAF 463
              AF
Sbjct: 126 KKKAF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,256
Number of Sequences: 5004
Number of extensions: 29119
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)