Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J19
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   139   3e-33
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   137   1e-32
11_06_0610 - 25449085-25453284                                         33   0.30 
12_02_1174 - 26696869-26698191                                         31   1.6  
12_02_0599 + 20897093-20898357,20898507-20898589,20899840-208999...    30   2.8  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  139 bits (336), Expect = 3e-33
 Identities = 65/130 (50%), Positives = 87/130 (66%)
 Frame = +2

Query: 74  VAQKIFXTPLMGLWDSIPKRGPVVIVVRSRPFPKDDPSKPVHLTAFIGYKAGMTHVVREP 253
           ++ + F  P  G    +P++       + + FPKDD SKP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 254 DRPGSKINKKEIVEAVTIIETPPMVCVXVVXYIETPHGLRALLXVWAXHXSDXCRRXXYQ 433
           ++PGSK++KKE  EAVTIIETPP+V V +V Y++TP GLR+L  VWA H S+  RR  Y+
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 434 XWXHCXXXAF 463
            W      AF
Sbjct: 121 NWCKSKKKAF 130


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  137 bits (332), Expect = 1e-32
 Identities = 64/130 (49%), Positives = 87/130 (66%)
 Frame = +2

Query: 74  VAQKIFXTPLMGLWDSIPKRGPVVIVVRSRPFPKDDPSKPVHLTAFIGYKAGMTHVVREP 253
           ++ + F  P  G    +P++       + + FPKDD +KP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60

Query: 254 DRPGSKINKKEIVEAVTIIETPPMVCVXVVXYIETPHGLRALLXVWAXHXSDXCRRXXYQ 433
           ++PGSK++KKE  EAVTIIETPP+V V +V Y++TP GLR+L  VWA H S+  RR  Y+
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 434 XWXHCXXXAF 463
            W      AF
Sbjct: 121 NWCKSKKKAF 130


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 509 YTPISPXMXPXXTXAPXXAPHXPXSCQPQLXHPXXPPXXPTSP 637
           YTP  P   P    +P   PH P    P   HP  PP    SP
Sbjct: 766 YTPSPPKSSPPEEKSPP--PHSPEKSPPSEAHPTSPPPSEKSP 806


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 479 TGPXTXXAXXYTPISPXMXPXXTXAPXXAPHXPXSCQPQLXHPXXPPXXPTSP 637
           T P        +P+ P   P  T      PH P   +PQ   P  PP  P  P
Sbjct: 109 TSPEFKTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQ-PPPSLPPPPPPPP 160


>12_02_0599 +
           20897093-20898357,20898507-20898589,20899840-20899903,
           20900057-20900354,20900385-20900426
          Length = 583

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 149 VVRSRPFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 268
           V R  PFP DDP+  +   +  G K G+  ++R P  P S
Sbjct: 13  VFRDGPFPDDDPTAAIGHNS-RGDKVGVRFLLRAPPEPSS 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,736
Number of Sequences: 37544
Number of extensions: 263024
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)