Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J19
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   8.6  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   8.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   8.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   8.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 306 MVTASTISFLLIFEPGRSGSLTTWVI 229
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 862 PAPPPPSP 885
           PAPPPP P
Sbjct: 341 PAPPPPPP 348


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 86  IFXTPLMGLWDSIPKRGPVVIVVRSRPFPKD-DPSKPVHLTAFIGYKA 226
           IF   LMG      K+  ++  V++  FP+D +   P+      G KA
Sbjct: 53  IFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKA 100


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 86  IFXTPLMGLWDSIPKRGPVVIVVRSRPFPKD-DPSKPVHLTAFIGYKA 226
           IF   LMG      K+  ++  V++  FP+D +   P+      G KA
Sbjct: 54  IFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKA 101


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 86  IFXTPLMGLWDSIPKRGPVVIVVRSRPFPKD-DPSKPVHLTAFIGYKA 226
           IF   LMG      K+  ++  V++  FP+D +   P+      G KA
Sbjct: 53  IFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKA 100


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 86  IFXTPLMGLWDSIPKRGPVVIVVRSRPFPKD-DPSKPVHLTAFIGYKA 226
           IF   LMG      K+  ++  V++  FP+D +   P+      G KA
Sbjct: 53  IFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKA 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,629
Number of Sequences: 438
Number of extensions: 2537
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)