Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J17
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +2

Query: 713 PXXXXXPPPPXP--XPPXXXPPPP 778
           P     PPPP P   PP   PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 837 GGGXGXXXXXXXXXGXXXXXGGGGXXXGGXGXGGGGXXXXXG 712
           GGG G         G     GG G   GG G  GGG     G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +2

Query: 737  PPXPXPPXXXPP-PPXXXXXPXXXXXXXXXPXPPP 838
            PP P P    PP PP     P         P PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 731 PPPPXPXPPXXXPPPPXXXXXPXXXXXXXXXPXPPP 838
           PPPP P      P P      P         P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 734 PPPXPXPPXXXPPPPXXXXXPXXXXXXXXXPXPPP 838
           P P P P    PPPP     P         P PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 731 PPPPXPXPPXXXPPPP 778
           PPPP P      PPPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 737  PPXPXPPXXXPPPPXXXXXPXXXXXXXXXPXP 832
            P  P PP   PPPP     P         P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 731 PPPPXPXPPXXXPPPP 778
           PPPP P P    P PP
Sbjct: 7   PPPPAPAPAAAAPAPP 22


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 5.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 731 PPPPXPXPP 757
           PPPP P PP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 734 PPPXPXPPXXXPP 772
           P P P PP   PP
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,853
Number of Sequences: 5004
Number of extensions: 22733
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)