Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J13
         (1064 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.38 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.38 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671  PPPPPPPP 694
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 737  PPPXPPPP 760
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 740  PPXPPPPP 763
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
 Frame = +2

Query: 671 PPPPPPPPXXXXXSHPXTPXPXPPPXP---PPPPXXPPXPP 784
           P    P P       P  P    PP P   PPP   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -3

Query: 762 GGGGGXGGGXGXGVXGCXKXXXXGGGGGGGG 670
           G G    GG   G  G         GGGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 722 TPXPXPPPXPPPPPXXPP 775
           TP P P P PPPP    P
Sbjct: 337 TP-PKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 737 PPPXPPPPPXXPPXP 781
           P P PPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 671 PPPPPPPP 694
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 752 PPPPXXPPXPP 784
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 681  GGGGXXXXVGGXGGXG 634
            GGGG    +GG GG G
Sbjct: 1705 GGGGSLAGLGGLGGLG 1720


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 681  GGGGXXXXVGGXGGXG 634
            GGGG    +GG GG G
Sbjct: 1701 GGGGSLAGLGGLGGLG 1716


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 671  PPPPPPPP 694
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 653 PTXXXXPPPPPPPPXXXXXSHPXTPXPXPPPXPPPP 760
           P     P PP P       + P    P   P P PP
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 653 PTXXXXPPPPPPPPXXXXXSHPXTPXPXPPPXPPPP 760
           P     P PP P       + P    P   P P PP
Sbjct: 129 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,261
Number of Sequences: 438
Number of extensions: 6879
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35547795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)