Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_J10
(1444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 41 5e-04
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 33 0.074
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 3.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 8.5
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/41 (53%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 1391 GGRGXXGGGGGXXARGXXGXSGGXRGGXXG--GGXXGAXCG 1275
GGRG GGG ARG G GG RGG G GG GA G
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/57 (42%), Positives = 24/57 (42%)
Frame = -3
Query: 1391 GGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXGAXCGXVXXXXRRXRXGRGXGER 1221
GGRG GG G G G GG RGG GGG GA G R G G R
Sbjct: 9 GGRGGSRGGRGGF-NGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = -3
Query: 1352 ARGXXGXSGGXRGGXXG-----GGXXGAXCGXVXXXXRRXRXGRGXGERSXG 1212
+RG G S G RGG G GG G G R R GRG G
Sbjct: 7 SRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 1397 GXGGRGXXGGGGGXXARGXXGXSGGXR 1317
G GGRG GG G + G G GG +
Sbjct: 46 GRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 33.5 bits (73), Expect = 0.074
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 1397 GXGGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXG 1287
G GG G GGG G GG RGG GG G
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 33.1 bits (72), Expect = 0.098
Identities = 22/52 (42%), Positives = 23/52 (44%)
Frame = -3
Query: 1391 GGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXGAXCGXVXXXXRRXRXGR 1236
GGRG GG G +RG G GG RG GGG G G R GR
Sbjct: 145 GGRGGSRGGFGGNSRG--GFGGGSRG-GFGGGSRGGSRGGFRGGSRGGFRGR 193
Score = 31.9 bits (69), Expect = 0.23
Identities = 23/59 (38%), Positives = 24/59 (40%)
Frame = -3
Query: 1397 GXGGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXGAXCGXVXXXXRRXRXGRGXGER 1221
G GGRG GG G +RG G G RGG GG G G R G G R
Sbjct: 136 GRGGRGGFRGGRGG-SRG--GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 1397 GXGGRGXXGGGGGXXARGXXGXSGGXRGGXXG 1302
G G RG GGG +RG G GG RGG G
Sbjct: 163 GGGSRGGFGGGSRGGSRG--GFRGGSRGGFRG 192
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.30
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 1397 GXGGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXGAXCG 1275
G GG G GG G G G GG G G G G G
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
Score = 30.7 bits (66), Expect = 0.52
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 1391 GGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXG 1287
GG G GGG G G G GG G GGG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGP--GGFGGGLGG 253
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 1391 GGRGXXGGGGGXXARGXXGXSGGXRGGXXGGGXXG 1287
GG G GGG G G G GG G GGG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGP--GGFGGGPGG 267
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +2
Query: 1295 PPPPXXRXXPX---HXPXLHPVRXXRRPXPXPPALPXLS 1402
PPPP R P P L R P PPA+P S
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +1
Query: 1219 LRSPXPRPXRXLRXXXXTXPXXAPHXXXXXXXXXXXXLXPXXPRAXXPPPPPXXP 1383
L+SP P P + P P P A PPPPP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,528
Number of Sequences: 5004
Number of extensions: 11117
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 804807090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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