Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J07
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0414 - 8825575-8826654,8826737-8827144                           29   3.8  
10_03_0023 - 7151465-7152111,7152222-7152405                           29   5.0  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    29   5.0  
07_03_1433 + 26513728-26514135,26525534-26526280                       29   6.6  
06_01_0486 - 3455030-3455770                                           29   6.6  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    29   6.6  
05_03_0618 - 16262826-16263097,16263111-16263183                       28   8.7  
03_02_0950 + 12661008-12662312,12662403-12662576                       28   8.7  

>09_02_0414 - 8825575-8826654,8826737-8827144
          Length = 495

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/84 (26%), Positives = 27/84 (32%)
 Frame = +1

Query: 382 PHPX*SDLHRPXCQAXKQKGPSRPXVDRPTKPQPNCIX*LXXXXXPDXLLPSXPPXXENK 561
           PHP  S   +  CQ    + PS      P  PQ            P    P  PP  +N 
Sbjct: 3   PHPPSSYSDKKTCQNVPPEKPSSTSFCHPQFPQHLLSHPAYAMNFPFPPFPHYPPYSQNF 62

Query: 562 XFTPTXLSXPXTTPPXPXXTPPXP 633
            +       P + PP P    P P
Sbjct: 63  QYAVPPQYAPYSLPP-PDGAMPSP 85


>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = +1

Query: 451 PXVDRPTKPQP-NCIX*LXXXXXPDXLLPSXPPXXENKXFTPTXLSXPXTTPPXPXXTPP 627
           P    P  P P + +  +     P  +LP   P        P  L  P   PP P   PP
Sbjct: 186 PIPPNPITPAPPSLVPPVFPTPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPPP 245


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
 Frame = -3

Query: 337 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 191
           V E  G+P+AV D  +    D +  +FL+        G           L   N D+ I 
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 190 LLRQYVISSWCKCGVRSQRTHGEDEGK 110
            L +   +  C+  V S R HG  +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = +1

Query: 517 PDXLLPSXPPXXENKXFTPTXLSX----PXTTPPXPXXTPPXP 633
           P  L PS PP       TP   +     P TT P P  TPP P
Sbjct: 37  PPSLSPSMPPTYPPPSSTPPSPAPVSPSPPTTYPPPSTTPPNP 79


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/82 (26%), Positives = 26/82 (31%)
 Frame = +1

Query: 382 PHPX*SDLHRPXCQAXKQKGPSRPXVDRPTKPQPNCIX*LXXXXXPDXLLPSXPPXXENK 561
           P P     H P      +  P+ P V  P    P  I        P  + P  PP     
Sbjct: 68  PSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVP-- 125

Query: 562 XFTPTXLSXPXTTPPXPXXTPP 627
              PT  S P   PP    +PP
Sbjct: 126 --PPTPPSPPPYVPPPTPPSPP 145


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 188 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTXDG 358
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T++   +L T  G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 169 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 83
           S  C+CG+RS+R    +E +  +  LG V
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52


>03_02_0950 + 12661008-12662312,12662403-12662576
          Length = 492

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 173 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 274
           +VL+ +      +GEY+ AIA CS+ L++ K  V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,573
Number of Sequences: 37544
Number of extensions: 270040
Number of successful extensions: 1144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)