Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_J03
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 42 1e-04
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.67
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.89
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 28 1.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.6
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 3.6
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 26 6.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 8.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 8.3
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Frame = +3
Query: 447 VIHLLETLRED--YLLGLITNGPSRAQWQKIERLGLRKYFDCVLVSGDLPWEKPDQHIF- 617
+I L+ +E+ Y++G+I+N R + +E G+ D S D+ +EKP + IF
Sbjct: 111 LIDFLKRNKEERKYIIGIISNTDERIR-TVLEDYGIDHLIDIYAFSYDVGFEKPSREIFD 169
Query: 618 ---HEACKLLN--VEPRNCIMVGDKLETDIKGGK 704
+A KLL ++P C+ +GD L D+ +
Sbjct: 170 YAMEKAVKLLGQEIQPEECMHLGDDLIKDVSAAR 203
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 253 VFGKAIFILQQFHELITSFSISFSCL 176
+F K IF LQ FHE SF+CL
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCL 477
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.1 bits (62), Expect = 0.89
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 198 KLVISSWNCCKMNMAFPKTWLWRAVPHSYAPSGXRPDDESYALH 329
K V +S C+ + AF KT+ + V PS +P DESY H
Sbjct: 847 KDVETSPGSCETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDH 890
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 158 LDNTLIQTRKGDTKACNKLVELLQNEYGLPKDMAVESGSTFLRAFR 295
+ N+ + D + + L E LQNE G+P +++ S +L A +
Sbjct: 162 ISNSQLSDHNPDFQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIK 207
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -1
Query: 706 SFPPLISVSSLSPTIMQLRGSTLR--SLHASW 617
+FP SV+SLSP++ QL + +R ++H W
Sbjct: 105 TFPEFSSVNSLSPSLFQLIVNRMRFDAIHPEW 136
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 748 SFCNGIQTVXXSXASFPPLISVSSLSPTIMQLRGSTLRSLHASWKMC*SGFSQGR 584
S NG+ +V S S PPL +S+SPT+ GS L L + + +G G+
Sbjct: 441 SSINGMNSVNFSTISPPPLSRSASISPTLSG-SGSGLTPLSSHFPSAATGLVGGQ 494
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 258 AMSLGRPYSFCSSSTSLLQALVSPFLVC-IKVLSKSNSIAETS 133
+MSLGRP++ + T++ + P VC I++ S+SN I + S
Sbjct: 379 SMSLGRPFAISNDQTNVHE----PSNVCDIQISSQSNCIPDPS 417
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 597 KPDQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAXLXXTVWI 734
KP + +N + + VGD+L TDI+ K + L ++ +
Sbjct: 220 KPYDEMMEAIIANVNFDRKKACFVGDRLNTDIQFAKNSNLGGSLLV 265
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 246 GRPYSFCSSSTSLLQALVS 190
G Y FCSS TSL+ L++
Sbjct: 561 GTSYDFCSSYTSLMDRLIN 579
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 360 LPKNYKHIAKSVSTE 404
LPKNY ++AKS S E
Sbjct: 345 LPKNYAYVAKSTSPE 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,447
Number of Sequences: 5004
Number of extensions: 69112
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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