Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_J02
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0009 - 12132781-12133272                                         30   2.9  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   6.7  
11_01_0602 - 4788483-4788659,4789106-4789174,4789265-4789742,479...    28   8.9  

>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 230 RSSTWAREQRWSCSKPAPERRRRIGSLRSSVVSLCKFNRG 111
           R   W RE+R S  +  P +RRR+G  R      C  + G
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRRGCGSGTCAESAG 147


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 833 GXGGGXGXGFPPXXXXXPPP 892
           G GGG G GF P     PPP
Sbjct: 20  GGGGGGGGGFSPTAAKPPPP 39


>11_01_0602 -
           4788483-4788659,4789106-4789174,4789265-4789742,
           4791348-4791892
          Length = 422

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 61  LDSAHQVISTAPLVS*RPRLNLHKLTTELRKDPILRLRSGAGFE 192
           +D+AH+V   A +VS  P  N+ +L     +  +L + +GAG E
Sbjct: 24  VDAAHRVDGRAEVVSPAPGGNIGRLDRSSTEPELLDIHAGAGEE 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,778
Number of Sequences: 37544
Number of extensions: 318766
Number of successful extensions: 1005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)